Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g117340.1.1 | Tomato | cytosol | 87.7 | 90.61 |
| PGSC0003DMT400073435 | Potato | cytosol | 66.31 | 64.92 |
| KRH23610 | Soybean | cytosol | 54.01 | 52.6 |
| KRH09696 | Soybean | cytosol | 55.08 | 52.55 |
| VIT_09s0002g08420.t01 | Wine grape | golgi, plasma membrane | 58.82 | 46.81 |
| GSMUA_Achr9P26950_001 | Banana | cytosol | 38.5 | 46.75 |
| KRH47406 | Soybean | cytosol | 50.27 | 46.31 |
| GSMUA_Achr4P09380_001 | Banana | cytosol | 43.32 | 42.86 |
| PGSC0003DMT400073434 | Potato | cytosol | 30.48 | 42.54 |
| PGSC0003DMT400036834 | Potato | nucleus | 47.06 | 41.9 |
| KRH44503 | Soybean | cytosol | 47.06 | 40.55 |
| GSMUA_Achr8P14710_001 | Banana | cytosol | 36.36 | 38.64 |
| GSMUA_Achr1P09970_001 | Banana | cytosol | 38.5 | 37.5 |
| GSMUA_Achr8P25150_001 | Banana | cytosol | 37.97 | 37.37 |
| GSMUA_Achr8P17040_001 | Banana | cytosol | 34.22 | 36.36 |
| EES11537 | Sorghum | cytosol | 29.41 | 29.57 |
| PGSC0003DMT400078859 | Potato | cytosol | 37.43 | 27.67 |
| Os04t0644100-01 | Rice | cytosol | 26.2 | 26.06 |
| Zm00001d002096_P001 | Maize | cytosol | 27.81 | 25.37 |
| HORVU7Hr1G049610.2 | Barley | cytosol, extracellular, plastid | 27.27 | 24.88 |
| HORVU2Hr1G114860.1 | Barley | mitochondrion | 14.97 | 24.78 |
| HORVU7Hr1G115240.1 | Barley | cytosol, extracellular, mitochondrion | 27.27 | 24.64 |
| TraesCS7B01G432100.1 | Wheat | cytosol | 27.27 | 24.64 |
| TraesCS7D01G506000.1 | Wheat | cytosol, extracellular, mitochondrion | 27.81 | 23.96 |
| EER90109 | Sorghum | nucleus | 28.34 | 23.87 |
| Zm00001d046580_P001 | Maize | cytosol | 26.74 | 23.7 |
| Os06t0645500-01 | Rice | cytosol, nucleus, peroxisome | 29.41 | 23.11 |
| TraesCS7A01G515500.1 | Wheat | cytosol, extracellular, mitochondrion | 26.74 | 22.94 |
| Zm00001d036740_P001 | Maize | cytosol | 24.6 | 22.89 |
| TraesCS2A01G518900.1 | Wheat | cytosol | 25.13 | 22.38 |
| TraesCS2D01G520300.1 | Wheat | cytosol | 24.6 | 22.12 |
| TraesCS2B01G547200.1 | Wheat | cytosol | 23.53 | 22.11 |
| TraesCS7B01G044000.1 | Wheat | cytosol | 23.53 | 19.21 |
| TraesCS7D01G143100.1 | Wheat | cytosol | 23.53 | 18.97 |
| Zm00001d037494_P001 | Maize | cytosol, extracellular, plastid | 24.6 | 18.93 |
| HORVU7Hr1G029260.1 | Barley | cytosol | 23.53 | 18.88 |
| TraesCS7A01G141900.1 | Wheat | cytosol | 22.46 | 18.26 |
| OQU75953 | Sorghum | cytosol | 25.13 | 17.8 |
| Zm00001d045137_P001 | Maize | plastid | 13.9 | 15.2 |
| OQU80824 | Sorghum | plastid | 16.04 | 14.78 |
| Os06t0179100-00 | Rice | cytosol, nucleus | 17.11 | 10.56 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400084778 | EnsemblPlantsGene:PGSC0003DMG400034349 | EntrezGene:107059558 | Gene3D:1.10.150.50 | InterPro:SAM/pointed_sf | PANTHER:PTHR33915 |
| PANTHER:PTHR33915:SF1 | PGSC:PGSC0003DMG400034349 | RefSeq:XP_015161653.1 | SUPFAM:SSF47769 | UniParc:UPI000295DCDA | UniProt:M1D812 |
| MapMan:35.2 | : | : | : | : | : |
Description
Jp18 [Source:PGSC_GENE;Acc:PGSC0003DMG400034349]
Coordinates
chr3:-:57078648..57079211
Molecular Weight (calculated)
21664.0 Da
IEP (calculated)
10.244
GRAVY (calculated)
-0.532
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MDWFSWLSKT ELEPSLVYEY GLALAHNELE YDDVVYFNHE FLQSIGISIG KHRLEILKLA KKEKGAIPNS MSRFLQVIKR TKRRLSKYIR NWGHNEELAL
101: ALVPKKISSS RWKNSMLKRR RSSTRVAAAK QNTLLITNGS PNFISDSRMN SFSSPTVNDE KMGDDYWASC GVEAIRWDTM FQNLKPT
101: ALVPKKISSS RWKNSMLKRR RSSTRVAAAK QNTLLITNGS PNFISDSRMN SFSSPTVNDE KMGDDYWASC GVEAIRWDTM FQNLKPT
001: MEDWWFSWLS RTNLEPSLIH EYGLSFSQNE LEHEDISYFD HEFLQSMGIS IAKHRLEILK LARRDRKNSP PLTSRSISRV VTAIKKTRKC LSDHVRAWIR
101: REEESASSRA LVLVPKKTSN GIGKWRGGFL KRNKRSVMPS NGNGGLEKQE RLLLTNGTPC RIDSFSSPMV FDYSFKDEKL YAQDTYFEDI KWDSMFQNLK
201: PT
101: REEESASSRA LVLVPKKTSN GIGKWRGGFL KRNKRSVMPS NGNGGLEKQE RLLLTNGTPC RIDSFSSPMV FDYSFKDEKL YAQDTYFEDI KWDSMFQNLK
201: PT
Arabidopsis Description
At1g15760 [Source:UniProtKB/TrEMBL;Acc:Q9LMQ8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.