Factsheet for Zm00001d002096_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

peroxisome 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, peroxisome, secretory
MultiLoc:	peroxisome
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013817_P001
Zm00001d016727_P001
Zm00001d018662_P001
Zm00001d021861_P001
Zm00001d025020_P001
Zm00001d027680_P003
Zm00001d032483_P001
Zm00001d032568_P001
Zm00001d033054_P001
Zm00001d033664_P001
Zm00001d040150_P001
Zm00001d048402_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15760.1	Zm00001d013817_P001	AT3G20510.1	21798944
AT1G15760.1	Zm00001d033054_P001	AT3G20510.1	21798944
AT1G15760.1	Zm00001d033664_P001	AT4G09580.1	21798944
AT1G15760.1	Zm00001d016727_P001	AT4G14950.1	21798944
AT1G15760.1	Zm00001d021861_P001	AT4G14950.1	21798944
AT1G15760.1	Zm00001d040150_P001	AT4G14950.1	21798944
AT1G15760.1	Zm00001d018662_P001	AT5G43460.1	21798944
AT1G15760.1	Zm00001d025020_P001	AT5G43460.1	21798944
AT1G15760.1	Zm00001d027680_P003	AT5G43460.1	21798944
AT1G15760.1	Zm00001d032483_P001	AT5G43460.1	21798944
AT1G15760.1	Zm00001d032568_P001	AT5G43460.1	21798944
AT1G15760.1	Zm00001d048402_P001	AT5G43460.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11537	Sorghum	cytosol	58.54	64.52
Os04t0644100-01	Rice	cytosol	50.73	55.32
TraesCS2A01G518900.1	Wheat	cytosol	45.85	44.76
TraesCS2B01G547200.1	Wheat	cytosol	43.41	44.72
TraesCS2D01G520300.1	Wheat	cytosol	45.37	44.71
HORVU2Hr1G114860.1	Barley	mitochondrion	19.02	34.51
GSMUA_Achr9P26950_001	Banana	cytosol	25.37	33.77
PGSC0003DMT400073434	Potato	cytosol	20.98	32.09
Zm00001d036740_P001	Maize	cytosol	30.73	31.34
KRH09696	Soybean	cytosol	29.27	30.61
GSMUA_Achr8P17040_001	Banana	cytosol	25.85	30.11
GSMUA_Achr8P25150_001	Banana	cytosol	27.32	29.47
CDX87319	Canola	cytosol	25.37	29.38
CDY39968	Canola	cytosol	25.37	29.38
GSMUA_Achr8P14710_001	Banana	cytosol	24.88	28.98
Bra035174.1-P	Field mustard	cytosol	24.88	28.81
Solyc03g117340.1.1	Tomato	cytosol	25.37	28.73
PGSC0003DMT400073435	Potato	cytosol	26.34	28.27
KRH23610	Soybean	cytosol	26.34	28.12
GSMUA_Achr1P09970_001	Banana	cytosol	26.34	28.12
Zm00001d037494_P001	Maize	cytosol, extracellular, plastid	33.17	27.98
Solyc06g068310.1.1	Tomato	cytosol	26.34	27.98
Zm00001d046580_P001	Maize	cytosol	28.78	27.96
PGSC0003DMT400084778	Potato	nucleus	25.37	27.81
CDX67952	Canola	cytosol	25.37	27.81
Bra003571.1-P	Field mustard	cytosol	24.88	27.27
AT1G80520.1	Thale cress	nucleus	25.37	27.08
GSMUA_Achr4P09380_001	Banana	cytosol	24.88	26.98
CDX79380	Canola	cytosol	25.37	26.8
Solyc03g117310.1.1	Tomato	cytosol	25.85	25.24
PGSC0003DMT400036834	Potato	nucleus	25.37	24.76
AT1G15760.1	Thale cress	nucleus	24.39	24.75
KRH47406	Soybean	cytosol	24.39	24.63
CDY61373	Canola	cytosol	23.9	24.26
Bra026110.1-P	Field mustard	cytosol	23.9	24.26
CDY36586	Canola	nucleus	23.9	24.26
VIT_09s0002g08420.t01	Wine grape	golgi, plasma membrane	27.8	24.26
KRH44503	Soybean	cytosol	23.9	22.58
Solyc07g007350.1.1	Tomato	cytosol	26.34	21.18
Zm00001d045137_P001	Maize	plastid	17.56	21.05
CDY50403	Canola	cytosol	25.37	20.97
Bra013153.1-P	Field mustard	cytosol	25.37	20.97
CDX93107	Canola	cytosol	25.37	20.97
PGSC0003DMT400078859	Potato	cytosol	25.85	20.95
VIT_11s0118g00550.t01	Wine grape	cytosol	24.88	20.32
AT2G12462.1	Thale cress	cytosol	24.39	20.08
KRH12842	Soybean	cytosol, nucleus, plastid	24.88	17.96
KRH37823	Soybean	nucleus	24.39	17.06
KRH20227	Soybean	cytosol	23.41	16.27
KRH03583	Soybean	nucleus	23.9	15.41

Protein Annotations

EnsemblPlants:Zm00001d002096_P001	EnsemblPlants:Zm00001d002096_T001	EnsemblPlantsGene:Zm00001d002096	EntrezGene:103645858	Gene3D:1.10.150.50	InterPro:SAM/pointed_sf
PANTHER:PTHR33915	PANTHER:PTHR33915:SF3	ProteinID:ONM13049.1	SEG:seg	SUPFAM:SSF47769	UniParc:UPI000221D309
UniProt:A0A1D6DWJ7	MapMan:35.2	:	:	:	:

Description

Sterile alpha motif (SAM) domain-containing protein

Coordinates

chr2:-:5947564..5948181

Molecular Weight (calculated)

22387.8 Da

IEP (calculated)

10.978

GRAVY (calculated)

-0.439

Length

205 amino acids

Sequence
(BLAST)

001: MDWHAWLSGA RLEPALVYEY ALVFARNELE ADDVAFLDHE FLHSMGISVA KHRLEILKLA WRDRRSRGRA GAGRPAAALA RLLLGRVARY VRSLVRREGD
101: CSSTALVLVP PTTQPQQQQQ RPGDGRSPPC VGVGGVCVSK HSQQRRGGNK ALRRARSEPK GTPPRASVVG GRAAAAVHAV GDDVEGGSGS EMVRWDRLFQ
201: DLKPN

Best Arabidopsis Sequence Match ( AT1G80520.1 )
(BLAST)

001: MDWFSWLSRT NLEASLIYEY GLSFSNNELE YEDIAYFNHE FLQSMGISIA KHRLEILKLA RRDRKPSPLT ARSIFRVLIA IKKTGKCFSE HVRAWIRREE
101: SSRALVVVSR STSSSGNGRW KSARKKRLVM PSNGNGVKEE RLLLTNGTPC RLDSFSNPKV SSGYEDDDNH WGNKDVEEKI KWDSMFQNLK PT

Arabidopsis Description

Sterile alpha motif (SAM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9M8M0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.