Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- peroxisome 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER93600 | Sorghum | peroxisome, plasma membrane, plastid | 97.83 | 97.13 |
| HORVU4Hr1G006740.1 | Barley | endoplasmic reticulum, plasma membrane | 79.42 | 90.91 |
| TraesCS4B01G041800.1 | Wheat | plasma membrane | 89.53 | 88.26 |
| TraesCS4A01G272200.1 | Wheat | plasma membrane | 89.17 | 88.21 |
| Os03t0703900-01 | Rice | peroxisome | 88.09 | 88.09 |
| TraesCS4D01G039000.1 | Wheat | plasma membrane | 89.53 | 87.94 |
| GSMUA_Achr6P06250_001 | Banana | plasma membrane | 70.76 | 71.79 |
| GSMUA_Achr6P04140_001 | Banana | plasma membrane | 70.76 | 71.79 |
| GSMUA_Achr7P11860_001 | Banana | peroxisome | 71.12 | 71.12 |
| KRH34979 | Soybean | nucleus, peroxisome, plasma membrane | 64.26 | 65.68 |
| KRG91806 | Soybean | plasma membrane | 64.26 | 65.68 |
| VIT_18s0072g01050.t01 | Wine grape | cytosol, golgi, peroxisome | 66.06 | 65.59 |
| PGSC0003DMT400067170 | Potato | plasma membrane | 66.06 | 64.89 |
| CDX96363 | Canola | plasma membrane | 63.54 | 64.71 |
| Bra016097.1-P | Field mustard | plasma membrane | 63.54 | 64.71 |
| Solyc06g065400.2.1 | Tomato | plasma membrane | 65.7 | 64.54 |
| CDX72847 | Canola | plasma membrane | 63.18 | 64.34 |
| Bra003904.1-P | Field mustard | peroxisome | 63.54 | 63.54 |
| CDX82201 | Canola | peroxisome | 62.82 | 63.04 |
| CDX75108 | Canola | plasma membrane | 62.45 | 62.91 |
| CDY48052 | Canola | plasma membrane | 62.09 | 62.55 |
| Bra038380.1-P | Field mustard | plasma membrane | 62.09 | 62.55 |
| PGSC0003DMT400002299 | Potato | golgi, peroxisome, plasma membrane | 63.9 | 62.11 |
| AT4G09580.1 | Thale cress | golgi, peroxisome, plasma membrane | 63.9 | 61.67 |
| Zm00001d000439_P002 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 50.9 | 55.51 |
| Zm00001d017689_P002 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 49.82 | 54.33 |
| AT1G71940.2 | Thale cress | plasma membrane | 58.84 | 53.27 |
| Solyc11g018620.1.1 | Tomato | endoplasmic reticulum, plasma membrane | 63.54 | 51.46 |
| CDY03670 | Canola | peroxisome | 37.55 | 50.49 |
| Bra007997.1-P | Field mustard | plasma membrane | 37.18 | 50.0 |
| CDX68293 | Canola | cytosol, nucleus, plasma membrane, plastid | 64.98 | 39.05 |
| CDY36672 | Canola | cytosol, nucleus, plasma membrane | 63.18 | 38.63 |
| Zm00001d026194_P003 | Maize | plasma membrane | 32.13 | 34.5 |
Protein Annotations
| EMBL:EU963293 | EnsemblPlants:Zm00001d033664_P001 | EnsemblPlants:Zm00001d033664_T001 | EnsemblPlantsGene:Zm00001d033664 | EntrezGene:100283054 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:SNARE_assoc | PANTHER:PTHR43220 | PANTHER:PTHR43220:SF3 | PFAM:PF09335 |
| ProteinID:ONM08370.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000182CCA1 | UniProt:B6TE78 | MapMan:35.1 |
Description
Gtk16 protein
Coordinates
chr1:+:269979987..269984243
Molecular Weight (calculated)
30475.9 Da
IEP (calculated)
10.318
GRAVY (calculated)
0.505
Length
277 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMPFARRDI EAAGAGASSD DSPAAKKGKP ELAGARPALT RSEAFAFAAV LALFTAGIFC VFLTAPRGEF GQILRLPRSL ADVRLLKDNL AVYARDYQTN
101: FILGYCSIYI FMQTFMIPGT IFMSLLAGAL FGVIKGGILV VFTATAGGSS CYFVSKLIGR PLVSWLWPEK LRYFQSEIAK RKEKLLNYML FLRITPTLPN
201: TFINMASPIV DIPFHIFFAA TLVGLIPASY ITVKAGRALG DLKSVRELYD FKTLVVLFLI GSVVVVPTIL KRKRTYE
101: FILGYCSIYI FMQTFMIPGT IFMSLLAGAL FGVIKGGILV VFTATAGGSS CYFVSKLIGR PLVSWLWPEK LRYFQSEIAK RKEKLLNYML FLRITPTLPN
201: TFINMASPIV DIPFHIFFAA TLVGLIPASY ITVKAGRALG DLKSVRELYD FKTLVVLFLI GSVVVVPTIL KRKRTYE
001: MAAPRNLTGD GGARQLVKDE ESPAASSAAK GLLNDDSPTG KRTKSERFPL SRWEFAVFFT VFLVFTTGLF CIYLTMPAAE YGKLKVPRTI SDLRLLKENL
101: GSYASEYQAR FILGYCSTYI FMQTFMIPGT IFMSLLAGAL FGVVRGFVLV VLNATAGACS CFFLSKLVGR PLVNWLWPEK LRFFQAEIAK RRDRLLNYML
201: FLRITPTLPN LFINLSSPIV DIPFHVFFLA TLVGLMPASY ITVRAGLALG DLRSVKDLYD FKTLSVLFLI GSISIFPALL KRKRVYE
101: GSYASEYQAR FILGYCSTYI FMQTFMIPGT IFMSLLAGAL FGVVRGFVLV VLNATAGACS CFFLSKLVGR PLVNWLWPEK LRFFQAEIAK RRDRLLNYML
201: FLRITPTLPN LFINLSSPIV DIPFHVFFLA TLVGLMPASY ITVRAGLALG DLRSVKDLYD FKTLSVLFLI GSISIFPALL KRKRVYE
Arabidopsis Description
Uncharacterized membrane protein At4g09580 [Source:UniProtKB/Swiss-Prot;Acc:Q8L586]
SUBAcon: [peroxisome,golgi,plasma membrane]
SUBAcon: [peroxisome,golgi,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.