Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES05689 | Sorghum | plasma membrane | 94.88 | 94.88 |
| Os02t0693500-01 | Rice | plasma membrane | 82.68 | 82.35 |
| Zm00001d000439_P002 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 79.92 | 79.92 |
| GSMUA_Achr4P19040_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 71.65 | 73.39 |
| Bra012640.1-P | Field mustard | cytosol | 59.84 | 72.38 |
| CDX90446 | Canola | cytosol | 59.84 | 72.38 |
| GSMUA_Achr4P27330_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 70.87 | 70.87 |
| VIT_02s0012g01630.t01 | Wine grape | peroxisome, plasma membrane, vacuole | 68.11 | 68.11 |
| GSMUA_Achr4P12280_001 | Banana | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 64.96 | 67.62 |
| GSMUA_Achr9P23350_001 | Banana | mitochondrion, plasma membrane | 64.57 | 67.21 |
| KRH39560 | Soybean | plasma membrane | 67.72 | 66.67 |
| CDY54781 | Canola | plasma membrane | 64.57 | 63.81 |
| Bra040182.1-P | Field mustard | plasma membrane | 64.57 | 63.81 |
| CDX78801 | Canola | plasma membrane | 64.17 | 63.42 |
| PGSC0003DMT400045191 | Potato | plasma membrane | 68.11 | 62.68 |
| Solyc08g076670.2.1 | Tomato | plasma membrane | 68.11 | 62.68 |
| AT4G17790.1 | Thale cress | plasma membrane | 64.17 | 61.74 |
| KRH74398 | Soybean | golgi, peroxisome, plasma membrane | 67.32 | 59.38 |
| Zm00001d026194_P003 | Maize | plasma membrane | 53.94 | 53.1 |
| Zm00001d033664_P001 | Maize | peroxisome | 54.33 | 49.82 |
| CDY01492 | Canola | plasma membrane | 31.5 | 48.48 |
| CDY01491 | Canola | golgi, peroxisome, plasma membrane | 39.76 | 42.8 |
Protein Annotations
| EMBL:EU966765 | EnsemblPlants:Zm00001d017689_P002 | EnsemblPlants:Zm00001d017689_T002 | EnsemblPlantsGene:Zm00001d017689 | EntrezGene:100272928 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:SNARE_assoc | PANTHER:PTHR43220 | PANTHER:PTHR43220:SF6 | PFAM:PF09335 |
| ProteinID:AQK73741.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000182DB8D | UniProt:B6TP50 | MapMan:35.1 |
Description
SNARE associated Golgi protein family
Coordinates
chr5:-:204310947..204313384
Molecular Weight (calculated)
27548.9 Da
IEP (calculated)
8.945
GRAVY (calculated)
0.606
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MARDDGFPVW EAALLAGVAA VFAAGLAGVY ISMPRSDYSF LKLPRNLQEL QVLTVHLEGY SSDYTIQVLV GYCAVYIFMQ TFMIPGTIFM SLLAGALFGQ
101: LGGLALVIFA ATAGASSCYF LSKLVGKPLV FSLWPDKLTF FQKQVAKRRE KLLNYMLFLR VTPTLPNTFI NFSSPIVGVP YHTFFFATAI GLVPAAYVTV
201: RAGIALSDLR SLNDLYDPQS IAVLFLIGLV SVAPTLLGKN EKPTSASDMA ANTN
101: LGGLALVIFA ATAGASSCYF LSKLVGKPLV FSLWPDKLTF FQKQVAKRRE KLLNYMLFLR VTPTLPNTFI NFSSPIVGVP YHTFFFATAI GLVPAAYVTV
201: RAGIALSDLR SLNDLYDPQS IAVLFLIGLV SVAPTLLGKN EKPTSASDMA ANTN
001: MEKEEGETTT TIGVVPAAPA KLPTPIYSLS FWEVTAASGV VLGFILGLVC VYLTMPQSDY SFLKLPRNLE DLQILRDNLE IYTSDYTVQV LVGYCLVYVF
101: MQTFMIPGTV FMSLLAGALF GVVKGMALVV STATAGASSC YFLSKLIGRP LLFSLWPDKL VFFQDQVARR KDRLLNYMLF LRLTPTLPNT FINVASPIVD
201: VPYHIFFLAT FIGLIPAAFV TVRAGLALGE LKSLGDLYDF SSMATLCLIG VLSVTPTLIG KKQA
101: MQTFMIPGTV FMSLLAGALF GVVKGMALVV STATAGASSC YFLSKLIGRP LLFSLWPDKL VFFQDQVARR KDRLLNYMLF LRLTPTLPNT FINVASPIVD
201: VPYHIFFLAT FIGLIPAAFV TVRAGLALGE LKSLGDLYDF SSMATLCLIG VLSVTPTLIG KKQA
Arabidopsis Description
SNARE associated Golgi protein family [Source:UniProtKB/TrEMBL;Acc:O23619]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.