Factsheet for GSMUA_Achr4P12280_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

plastid 1
extracellular 2
endoplasmic reticulum 4
vacuole 3
plasma membrane 4
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	endoplasmic reticulum, plasma membrane
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P23350_001	Banana	mitochondrion, plasma membrane	84.43	84.43
HORVU2Hr1G054810.1	Barley	endoplasmic reticulum, extracellular	36.07	81.48
HORVU7Hr1G023440.1	Barley	endoplasmic reticulum, plasma membrane	56.56	77.53
GSMUA_Achr4P19040_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	78.28	77.02
Bra012640.1-P	Field mustard	cytosol	65.98	76.67
CDX90446	Canola	cytosol	65.98	76.67
GSMUA_Achr4P27330_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	77.87	74.8
VIT_02s0012g01630.t01	Wine grape	peroxisome, plasma membrane, vacuole	74.59	71.65
Os02t0693500-01	Rice	plasma membrane	72.13	69.02
KRH39560	Soybean	plasma membrane	72.54	68.6
EES12761	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	71.31	68.5
Zm00001d000439_P002	Maize	endoplasmic reticulum, plasma membrane, vacuole	71.31	68.5
CDX78801	Canola	plasma membrane	72.13	68.48
Os04t0592600-01	Rice	plasma membrane, vacuole	70.9	68.11
Bra040182.1-P	Field mustard	plasma membrane	71.72	68.09
TraesCS2D01G446700.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	70.08	67.32
TraesCS2B01G468200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	70.08	67.32
TraesCS2A01G447800.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	70.08	67.32
CDY54781	Canola	plasma membrane	70.9	67.32
EES05689	Sorghum	plasma membrane	68.85	66.14
HORVU7Hr1G051100.2	Barley	endoplasmic reticulum, plasma membrane, vacuole	68.44	65.75
AT4G17790.1	Thale cress	plasma membrane	70.49	65.15
Zm00001d017689_P002	Maize	endoplasmic reticulum, plasma membrane, vacuole	67.62	64.96
PGSC0003DMT400045191	Potato	plasma membrane	70.9	62.68
Solyc08g076670.2.1	Tomato	plasma membrane	70.9	62.68
KRH74398	Soybean	golgi, peroxisome, plasma membrane	71.72	60.76
HORVU2Hr1G049420.14	Barley	cytosol, plastid	69.26	55.23
GSMUA_Achr6P06250_001	Banana	plasma membrane	60.25	53.85
GSMUA_Achr6P04140_001	Banana	plasma membrane	59.84	53.48
GSMUA_Achr7P11860_001	Banana	peroxisome	60.25	53.07
CDY01492	Canola	plasma membrane	34.43	50.91
CDY01491	Canola	golgi, peroxisome, plasma membrane	43.85	45.34
Zm00001d026194_P003	Maize	plasma membrane	45.08	42.64
HORVU7Hr1G044670.7	Barley	plasma membrane	22.54	36.18

Protein Annotations

EnsemblPlants:GSMUA_Achr4P12280_001	EnsemblPlants:GSMUA_Achr4T12280_001	EnsemblPlantsGene:GSMUA_Achr4G12280_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:SNARE_assoc	PANTHER:PTHR43220	PANTHER:PTHR43220:SF6	PFAM:PF09335	SEG:seg	TMHMM:TMhelix
UniParc:UPI0002956663	UniProt:M0SN93	MapMan:35.1	:	:	:

Description

Uncharacterized membrane protein At4g09580 [Source:GMGC_GENE;Acc:GSMUA_Achr4G12280_001]

Coordinates

chr4:-:9085288..9088555

Molecular Weight (calculated)

26750.3 Da

IEP (calculated)

9.443

GRAVY (calculated)

0.725

Length

244 amino acids

Sequence
(BLAST)

001: MEGGRSLPLS RRDLAAATVV FAIFGVGLAG LYLSMPASDY SFLKLPRTLE DIRILRDNLE SYTNDYTVQV LICYFTVYIF MQTFMIPGTV FMSILAGALF
101: GIAGGMVLVI LAATAGASSC YFLSKIIGRP LVFSLWPDKL SFFQAQVAKR REKLLNYILF LRVTPTLPNT FINMASPIVD VPYSIFFLAT LIGLIPAAYV
201: TVRAGTALGE LKSVADLYDF QSIATLFFIG IVTVTPTLIS KGQK

Best Arabidopsis Sequence Match ( AT4G17790.1 )
(BLAST)

001: MEKEEGETTT TIGVVPAAPA KLPTPIYSLS FWEVTAASGV VLGFILGLVC VYLTMPQSDY SFLKLPRNLE DLQILRDNLE IYTSDYTVQV LVGYCLVYVF
101: MQTFMIPGTV FMSLLAGALF GVVKGMALVV STATAGASSC YFLSKLIGRP LLFSLWPDKL VFFQDQVARR KDRLLNYMLF LRLTPTLPNT FINVASPIVD
201: VPYHIFFLAT FIGLIPAAFV TVRAGLALGE LKSLGDLYDF SSMATLCLIG VLSVTPTLIG KKQA

Arabidopsis Description

SNARE associated Golgi protein family [Source:UniProtKB/TrEMBL;Acc:O23619]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.