CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
mitochondrion 1
golgi 2
endoplasmic reticulum 2
plasma membrane 4
extracellular 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	endoplasmic reticulum, plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012640.1-P	Field mustard	cytosol	67.83	83.33
CDX90446	Canola	cytosol	67.83	83.33
KRH74398	Soybean	golgi, peroxisome, plasma membrane	91.09	81.6
HORVU2Hr1G054810.1	Barley	endoplasmic reticulum, extracellular	32.95	78.7
HORVU7Hr1G023440.1	Barley	endoplasmic reticulum, plasma membrane	53.88	78.09
VIT_02s0012g01630.t01	Wine grape	peroxisome, plasma membrane, vacuole	76.74	77.95
Bra040182.1-P	Field mustard	plasma membrane	76.74	77.04
CDX78801	Canola	plasma membrane	76.74	77.04
CDY54781	Canola	plasma membrane	75.97	76.26
GSMUA_Achr4P19040_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	72.48	75.4
AT4G17790.1	Thale cress	plasma membrane	75.58	73.86
GSMUA_Achr4P12280_001	Banana	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	68.6	72.54
PGSC0003DMT400045191	Potato	plasma membrane	77.52	72.46
Solyc08g076670.2.1	Tomato	plasma membrane	77.52	72.46
GSMUA_Achr4P27330_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	71.32	72.44
Os02t0693500-01	Rice	plasma membrane	70.93	71.76
GSMUA_Achr9P23350_001	Banana	mitochondrion, plasma membrane	67.05	70.9
Zm00001d000439_P002	Maize	endoplasmic reticulum, plasma membrane, vacuole	69.38	70.47
Os04t0592600-01	Rice	plasma membrane, vacuole	69.38	70.47
EES12761	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	68.6	69.69
TraesCS2D01G446700.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	68.6	69.69
TraesCS2B01G468200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	68.6	69.69
TraesCS2A01G447800.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	68.22	69.29
EES05689	Sorghum	plasma membrane	67.83	68.9
Zm00001d017689_P002	Maize	endoplasmic reticulum, plasma membrane, vacuole	66.67	67.72
HORVU7Hr1G051100.2	Barley	endoplasmic reticulum, plasma membrane, vacuole	66.28	67.32
KRG91806	Soybean	plasma membrane	62.4	59.41
KRH34979	Soybean	nucleus, peroxisome, plasma membrane	61.63	58.67
HORVU2Hr1G049420.14	Barley	cytosol, plastid	67.83	57.19
CDY01492	Canola	plasma membrane	36.05	56.36
Zm00001d026194_P003	Maize	plasma membrane	44.57	44.57
HORVU7Hr1G044670.7	Barley	plasma membrane	22.87	38.82

Protein Annotations

EMBL:ACUP02005943	EMBL:BT098237	EnsemblPlants:KRH39560	EnsemblPlantsGene:GLYMA_09G206000	EntrezGene:100793859	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:SNARE_assoc	PANTHER:PTHR43220	PANTHER:PTHR43220:SF6	PFAM:PF09335
ProteinID:KRH39560	ProteinID:KRH39560.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0001B16CFA	UniProt:C6TKM1
MapMan:35.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:43001911..43006118

Molecular Weight (calculated)

28209.8 Da

IEP (calculated)

8.595

GRAVY (calculated)

0.627

Length

258 amino acids

Sequence
(BLAST)

001: MGKQGLNTVE QQSVAPTASK FPLSFWEATV ASTVALVFAV GLLGVYLTMP DSDYSFLKLP RTLEDLQLLR DNLESYTSDY TAQVLVGYCV VYIFMQTFMI
101: PGTVFMSLLA GALFGVFKGV ALVVFTATAG ASSCYFLSKL IGRPILSSLW PEKLKFFQTQ VAKRRKGLLN YMLFLRLTPT LPNTFINFAS PIVDVPYHIF
201: FLATVIGLIP AAYVTVKAGL ALGELQSVGD LYDFNSIATL FLIGVVSVTP TLISKNES

Best Arabidopsis Sequence Match ( AT4G17790.1 )
(BLAST)

001: MEKEEGETTT TIGVVPAAPA KLPTPIYSLS FWEVTAASGV VLGFILGLVC VYLTMPQSDY SFLKLPRNLE DLQILRDNLE IYTSDYTVQV LVGYCLVYVF
101: MQTFMIPGTV FMSLLAGALF GVVKGMALVV STATAGASSC YFLSKLIGRP LLFSLWPDKL VFFQDQVARR KDRLLNYMLF LRLTPTLPNT FINVASPIVD
201: VPYHIFFLAT FIGLIPAAFV TVRAGLALGE LKSLGDLYDF SSMATLCLIG VLSVTPTLIG KKQA

Arabidopsis Description

SNARE associated Golgi protein family [Source:UniProtKB/TrEMBL;Acc:O23619]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.