Factsheet for VIT_02s0012g01630.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, vacuole, plasma membrane

Predictor Summary:

nucleus 1
peroxisome 1
endoplasmic reticulum 2
plasma membrane 3
extracellular 1
vacuole 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome, plasma membrane, vacuole
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	endoplasmic reticulum, plasma membrane
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G054810.1	Barley	endoplasmic reticulum, extracellular	35.83	84.26
Bra012640.1-P	Field mustard	cytosol	68.9	83.33
CDX90446	Canola	cytosol	68.9	83.33
HORVU7Hr1G023440.1	Barley	endoplasmic reticulum, plasma membrane	57.87	82.58
GSMUA_Achr4P19040_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	76.77	78.63
CDX78801	Canola	plasma membrane	77.95	77.04
Bra040182.1-P	Field mustard	plasma membrane	77.95	77.04
KRH39560	Soybean	plasma membrane	77.95	76.74
CDY54781	Canola	plasma membrane	77.56	76.65
GSMUA_Achr4P27330_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	76.38	76.38
GSMUA_Achr4P12280_001	Banana	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	71.65	74.59
Os02t0693500-01	Rice	plasma membrane	74.8	74.51
Solyc08g076670.2.1	Tomato	plasma membrane	80.31	73.91
PGSC0003DMT400045191	Potato	plasma membrane	80.31	73.91
AT4G17790.1	Thale cress	plasma membrane	76.77	73.86
GSMUA_Achr9P23350_001	Banana	mitochondrion, plasma membrane	70.47	73.36
Zm00001d000439_P002	Maize	endoplasmic reticulum, plasma membrane, vacuole	72.83	72.83
Os04t0592600-01	Rice	plasma membrane, vacuole	72.83	72.83
EES12761	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	72.05	72.05
TraesCS2B01G468200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	71.65	71.65
TraesCS2D01G446700.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	71.65	71.65
TraesCS2A01G447800.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	71.26	71.26
HORVU7Hr1G051100.2	Barley	endoplasmic reticulum, plasma membrane, vacuole	70.47	70.47
EES05689	Sorghum	plasma membrane	69.69	69.69
KRH74398	Soybean	golgi, peroxisome, plasma membrane	78.74	69.44
Zm00001d017689_P002	Maize	endoplasmic reticulum, plasma membrane, vacuole	68.11	68.11
HORVU2Hr1G049420.14	Barley	cytosol, plastid	70.47	58.5
VIT_18s0072g01050.t01	Wine grape	cytosol, golgi, peroxisome	62.2	56.63
CDY01492	Canola	plasma membrane	36.22	55.76
Zm00001d026194_P003	Maize	plasma membrane	46.85	46.12
HORVU7Hr1G044670.7	Barley	plasma membrane	24.02	40.13

Protein Annotations

EntrezGene:100264293	wikigene:100264293	MapMan:35.1	EMBL:AM440816	ProteinID:CAN78477	ProteinID:CAN78477.1
ProteinID:CCB57881	ProteinID:CCB57881.1	UniProt:F6HT71	EMBL:FN596247	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	EntrezGene:LOC100264293	wikigene:LOC100264293	PFAM:PF09335	PANTHER:PTHR43220	PANTHER:PTHR43220:SF6
InterPro:SNARE_assoc	TMHMM:TMhelix	UniParc:UPI00015C8E04	ArrayExpress:VIT_02s0012g01630	EnsemblPlantsGene:VIT_02s0012g01630	EnsemblPlants:VIT_02s0012g01630.t01
unigene:Vvi.2353	RefSeq:XP_002278896	RefSeq:XP_002278896.1	:	:	:

Description

No Description!

Coordinates

chr2:-:7886697..7889877

Molecular Weight (calculated)

28280.9 Da

IEP (calculated)

8.285

GRAVY (calculated)

0.550

Length

254 amino acids

Sequence
(BLAST)

001: MERRGERDCK ENVEGRFPLT FWEVTGASAV VGAFVLGLAC VYLTMPASDY SFLKLPRSLE DIQILRDHLE DYTSDYTVQV LVGYCMVYIF MQTFMIPGTV
101: FMSLLAGSLF GVFKGVALVV FTATAGASSC YFLSKLIGRP LVSFLWPDKL SFFQAQVAKR RERLLNYMLF LRVTPTLPNT FINVASPMVD VPYHIFFLAT
201: FIGLIPAAYV TVRAGIALGE LRSVGDLYDF QSIATLFLIG VVSVTPTLMS KNKS

Best Arabidopsis Sequence Match ( AT4G17790.1 )
(BLAST)

001: MEKEEGETTT TIGVVPAAPA KLPTPIYSLS FWEVTAASGV VLGFILGLVC VYLTMPQSDY SFLKLPRNLE DLQILRDNLE IYTSDYTVQV LVGYCLVYVF
101: MQTFMIPGTV FMSLLAGALF GVVKGMALVV STATAGASSC YFLSKLIGRP LLFSLWPDKL VFFQDQVARR KDRLLNYMLF LRLTPTLPNT FINVASPIVD
201: VPYHIFFLAT FIGLIPAAFV TVRAGLALGE LKSLGDLYDF SSMATLCLIG VLSVTPTLIG KKQA

Arabidopsis Description

SNARE associated Golgi protein family [Source:UniProtKB/TrEMBL;Acc:O23619]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.