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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:
  • extracellular 3
  • endoplasmic reticulum 4
  • vacuole 4
  • plasma membrane 4
  • golgi 3
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:secretory
iPSORT:secretory
MultiLoc:endoplasmic reticulum
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EES12761 Sorghum endoplasmic reticulum, plasma membrane, vacuole 98.43 98.43
HORVU7Hr1G023440.1 Barley endoplasmic reticulum, plasma membrane 64.57 92.13
Os04t0592600-01 Rice plasma membrane, vacuole 92.13 92.13
TraesCS2B01G468200.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 91.73 91.73
TraesCS2A01G447800.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 91.34 91.34
TraesCS2D01G446700.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 90.94 90.94
HORVU2Hr1G054810.1 Barley endoplasmic reticulum, extracellular 38.19 89.81
HORVU7Hr1G051100.2 Barley endoplasmic reticulum, plasma membrane, vacuole 88.19 88.19
Zm00001d017689_P002 Maize endoplasmic reticulum, plasma membrane, vacuole 79.92 79.92
GSMUA_Achr4P19040_001 Banana endoplasmic reticulum, plasma membrane, vacuole 75.2 77.02
Bra012640.1-P Field mustard cytosol 62.99 76.19
CDX90446 Canola cytosol 62.99 76.19
GSMUA_Achr4P27330_001 Banana endoplasmic reticulum, plasma membrane, vacuole 73.62 73.62
VIT_02s0012g01630.t01 Wine grape peroxisome, plasma membrane, vacuole 72.83 72.83
HORVU2Hr1G049420.14 Barley cytosol, plastid 87.4 72.55
GSMUA_Achr4P12280_001 Banana endoplasmic reticulum, mitochondrion, plasma membrane, vacuole 68.5 71.31
GSMUA_Achr9P23350_001 Banana mitochondrion, plasma membrane 67.72 70.49
KRH39560 Soybean plasma membrane 70.47 69.38
Bra040182.1-P Field mustard plasma membrane 68.5 67.7
CDY54781 Canola plasma membrane 68.11 67.32
CDX78801 Canola plasma membrane 68.11 67.32
AT4G17790.1 Thale cress plasma membrane 68.11 65.53
PGSC0003DMT400045191 Potato plasma membrane 70.08 64.49
Solyc08g076670.2.1 Tomato plasma membrane 70.08 64.49
KRH74398 Soybean golgi, peroxisome, plasma membrane 69.69 61.46
Zm00001d026194_P003 Maize plasma membrane 62.2 61.24
CDY01492 Canola plasma membrane 34.25 52.73
Zm00001d033664_P001 Maize peroxisome 55.51 50.9
CDY01491 Canola golgi, peroxisome, plasma membrane 42.13 45.34
Protein Annotations
EMBL:BT087783EnsemblPlants:Zm00001d000439_P002EnsemblPlants:Zm00001d000439_T002EnsemblPlantsGene:Zm00001d000439EntrezGene:100283797GO:GO:0005575
GO:GO:0016020GO:GO:0016021InterPro:SNARE_assocPANTHER:PTHR43220PANTHER:PTHR43220:SF6PFAM:PF09335
SEG:segTMHMM:TMhelixUniParc:UPI0001A4C08BUniProt:C4JAD6MapMan:35.1:
Description
SNARE associated Golgi protein family
Coordinates
chrB73V4_ctg88:+:8525..11623
Molecular Weight (calculated)
27648.2 Da
IEP (calculated)
5.782
GRAVY (calculated)
0.587
Length
254 amino acids
Sequence
(BLAST)
001: MGRDERFPVW EAALGAGVAA AFAAGLVGVY LSMPDSDYSF LKLPRNLEEL QILTGHLENY TSDYTLQVLV GYCAVYIFMQ TFMIPGTIFM SLLAGALFGQ
101: LRGLALVVFA ATAGASSCYF LSKMIGKPLV FTLWPDKLSF FQRQVAKRRE KLLNYMLFLR VTPTLPNTFI NLASPIVDVP YHIFLLGTLI GLIPAAYVTV
201: RAGIALGELT SLSDLYDTQS IALLFLIGVV SVTPALLGKD EAQEKPPEMA VGAS
Best Arabidopsis Sequence Match ( AT4G17790.1 )
(BLAST)
001: MEKEEGETTT TIGVVPAAPA KLPTPIYSLS FWEVTAASGV VLGFILGLVC VYLTMPQSDY SFLKLPRNLE DLQILRDNLE IYTSDYTVQV LVGYCLVYVF
101: MQTFMIPGTV FMSLLAGALF GVVKGMALVV STATAGASSC YFLSKLIGRP LLFSLWPDKL VFFQDQVARR KDRLLNYMLF LRLTPTLPNT FINVASPIVD
201: VPYHIFFLAT FIGLIPAAFV TVRAGLALGE LKSLGDLYDF SSMATLCLIG VLSVTPTLIG KKQA
Arabidopsis Description
SNARE associated Golgi protein family [Source:UniProtKB/TrEMBL;Acc:O23619]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.