Factsheet for GSMUA_Achr9P23350_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane

Predictor Summary:

plastid 1
mitochondrion 3
endoplasmic reticulum 3
plasma membrane 4
extracellular 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P12280_001	Banana	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	84.43	84.43
HORVU2Hr1G054810.1	Barley	endoplasmic reticulum, extracellular	34.43	77.78
HORVU7Hr1G023440.1	Barley	endoplasmic reticulum, plasma membrane	54.92	75.28
Bra012640.1-P	Field mustard	cytosol	63.52	73.81
CDX90446	Canola	cytosol	63.52	73.81
GSMUA_Achr4P19040_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	75.0	73.79
GSMUA_Achr4P27330_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	74.18	71.26
VIT_02s0012g01630.t01	Wine grape	peroxisome, plasma membrane, vacuole	73.36	70.47
Os02t0693500-01	Rice	plasma membrane	71.31	68.24
Os04t0592600-01	Rice	plasma membrane, vacuole	70.9	68.11
EES12761	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	70.49	67.72
Zm00001d000439_P002	Maize	endoplasmic reticulum, plasma membrane, vacuole	70.49	67.72
TraesCS2A01G447800.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	70.49	67.72
TraesCS2D01G446700.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	70.08	67.32
TraesCS2B01G468200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	70.08	67.32
KRH39560	Soybean	plasma membrane	70.9	67.05
Bra040182.1-P	Field mustard	plasma membrane	70.49	66.93
CDX78801	Canola	plasma membrane	70.08	66.54
CDY54781	Canola	plasma membrane	70.08	66.54
EES05689	Sorghum	plasma membrane	67.62	64.96
HORVU7Hr1G051100.2	Barley	endoplasmic reticulum, plasma membrane, vacuole	67.62	64.96
Zm00001d017689_P002	Maize	endoplasmic reticulum, plasma membrane, vacuole	67.21	64.57
AT4G17790.1	Thale cress	plasma membrane	69.26	64.02
PGSC0003DMT400045191	Potato	plasma membrane	71.72	63.41
Solyc08g076670.2.1	Tomato	plasma membrane	71.72	63.41
KRH74398	Soybean	golgi, peroxisome, plasma membrane	70.49	59.72
HORVU2Hr1G049420.14	Barley	cytosol, plastid	68.44	54.58
GSMUA_Achr6P06250_001	Banana	plasma membrane	59.43	53.11
GSMUA_Achr7P11860_001	Banana	peroxisome	59.84	52.71
GSMUA_Achr6P04140_001	Banana	plasma membrane	58.61	52.38
CDY01492	Canola	plasma membrane	32.38	47.88
CDY01491	Canola	golgi, peroxisome, plasma membrane	45.9	47.46
Zm00001d026194_P003	Maize	plasma membrane	46.72	44.19
HORVU7Hr1G044670.7	Barley	plasma membrane	24.18	38.82

Protein Annotations

EnsemblPlants:GSMUA_Achr9P23350_001	EnsemblPlants:GSMUA_Achr9T23350_001	EnsemblPlantsGene:GSMUA_Achr9G23350_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:SNARE_assoc	PANTHER:PTHR43220	PANTHER:PTHR43220:SF6	PFAM:PF09335	SEG:seg	TMHMM:TMhelix
UniParc:UPI000295E4C9	UniProt:M0U2U4	MapMan:35.1	:	:	:

Description

Uncharacterized membrane protein At4g09580 [Source:GMGC_GENE;Acc:GSMUA_Achr9G23350_001]

Coordinates

chr9:+:28207622..28210705

Molecular Weight (calculated)

27108.9 Da

IEP (calculated)

10.121

GRAVY (calculated)

0.633

Length

244 amino acids

Sequence
(BLAST)

001: MGGRRRFPLS RLEVAAATGV LASYMLGLVG LYLTMPASDY RFLKLPRTLE DLRILRDHLE SYTSDYTMQV LMCYFTVYIF MQTFMIPGTV FMSLLAGALF
101: GVAGGMVLVI VAATAGASSC FFLSKMIGRP LVFSLWPEKL TFFQAQVAKR REKLFNYLLF LRVTPTLPNT FINMASPIVN VPYRVFFLAT SIGLIPAAYV
201: TVRAGTALGE LKSVADLYDF QSIATIFFIG IVTLTPTFLS KGQK

Best Arabidopsis Sequence Match ( AT4G17790.1 )
(BLAST)

001: MEKEEGETTT TIGVVPAAPA KLPTPIYSLS FWEVTAASGV VLGFILGLVC VYLTMPQSDY SFLKLPRNLE DLQILRDNLE IYTSDYTVQV LVGYCLVYVF
101: MQTFMIPGTV FMSLLAGALF GVVKGMALVV STATAGASSC YFLSKLIGRP LLFSLWPDKL VFFQDQVARR KDRLLNYMLF LRLTPTLPNT FINVASPIVD
201: VPYHIFFLAT FIGLIPAAFV TVRAGLALGE LKSLGDLYDF SSMATLCLIG VLSVTPTLIG KKQA

Arabidopsis Description

SNARE associated Golgi protein family [Source:UniProtKB/TrEMBL;Acc:O23619]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.