CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, plasma membrane

Predictor Summary:

plastid 1
golgi 1
endoplasmic reticulum 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39560	Soybean	plasma membrane	81.6	91.09
Bra012640.1-P	Field mustard	cytosol	60.42	82.86
CDX90446	Canola	cytosol	60.42	82.86
VIT_02s0012g01630.t01	Wine grape	peroxisome, plasma membrane, vacuole	69.44	78.74
HORVU2Hr1G054810.1	Barley	endoplasmic reticulum, extracellular	29.51	78.7
HORVU7Hr1G023440.1	Barley	endoplasmic reticulum, plasma membrane	48.26	78.09
Bra040182.1-P	Field mustard	plasma membrane	69.44	77.82
CDX78801	Canola	plasma membrane	69.44	77.82
CDY54781	Canola	plasma membrane	68.06	76.26
GSMUA_Achr4P19040_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	64.24	74.6
AT4G17790.1	Thale cress	plasma membrane	67.01	73.11
Solyc08g076670.2.1	Tomato	plasma membrane	69.44	72.46
PGSC0003DMT400045191	Potato	plasma membrane	69.44	72.46
Os02t0693500-01	Rice	plasma membrane	63.54	71.76
GSMUA_Achr4P12280_001	Banana	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	60.76	71.72
GSMUA_Achr4P27330_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	63.19	71.65
GSMUA_Achr9P23350_001	Banana	mitochondrion, plasma membrane	59.72	70.49
Os04t0592600-01	Rice	plasma membrane, vacuole	61.81	70.08
Zm00001d000439_P002	Maize	endoplasmic reticulum, plasma membrane, vacuole	61.46	69.69
TraesCS2D01G446700.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	61.46	69.69
TraesCS2B01G468200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	61.46	69.69
TraesCS2A01G447800.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	61.11	69.29
EES12761	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	60.76	68.9
EES05689	Sorghum	plasma membrane	60.76	68.9
HORVU7Hr1G051100.2	Barley	endoplasmic reticulum, plasma membrane, vacuole	59.72	67.72
Zm00001d017689_P002	Maize	endoplasmic reticulum, plasma membrane, vacuole	59.38	67.32
KRG91806	Soybean	plasma membrane	55.9	59.41
KRH34979	Soybean	nucleus, peroxisome, plasma membrane	55.56	59.04
HORVU2Hr1G049420.14	Barley	cytosol, plastid	61.81	58.17
CDY01492	Canola	plasma membrane	31.94	55.76
Zm00001d026194_P003	Maize	plasma membrane	39.93	44.57
HORVU7Hr1G044670.7	Barley	plasma membrane	20.49	38.82

Protein Annotations

EMBL:ACUP02000021	EnsemblPlants:KRH74398	EnsemblPlantsGene:GLYMA_01G016800	EntrezGene:100782353	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:SNARE_assoc	PANTHER:PTHR43220	PANTHER:PTHR43220:SF6	PFAM:PF09335	ProteinID:KRH74398
ProteinID:KRH74398.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI00023376DF	UniProt:I1J4U1	MapMan:35.1

Description

hypothetical protein

Coordinates

chr1:+:1609124..1612598

Molecular Weight (calculated)

31888.3 Da

IEP (calculated)

9.165

GRAVY (calculated)

0.424

Length

288 amino acids

Sequence
(BLAST)

001: MSLSLLKVRQ RREEEKERGL SLEKRGGKYM ENEGVNTVVV EQQPVASTSK FPLSFWETTV ASTVALVFAV GLLGVYLTMP DSDYSFLKLP RTLQDLQLLR
101: DNLESYTSDY TAQVLVGYCV VYIFMQTFMI PGTVFMSLLA GALFGVFKGV ALVVFTATAG ASSCYFLSKL IGRPILSSLW PEKLKFFQTQ VAKRRKGLLN
201: YMLFLRLTPT LPNTFINFAS PIVDVPYHIF FLATVIGLIP AAYVTVKAGL ALGELQSVGD LYDFNSIATL FLIGVVSVTP TLMSKNES

Best Arabidopsis Sequence Match ( AT4G17790.1 )
(BLAST)

001: MEKEEGETTT TIGVVPAAPA KLPTPIYSLS FWEVTAASGV VLGFILGLVC VYLTMPQSDY SFLKLPRNLE DLQILRDNLE IYTSDYTVQV LVGYCLVYVF
101: MQTFMIPGTV FMSLLAGALF GVVKGMALVV STATAGASSC YFLSKLIGRP LLFSLWPDKL VFFQDQVARR KDRLLNYMLF LRLTPTLPNT FINVASPIVD
201: VPYHIFFLAT FIGLIPAAFV TVRAGLALGE LKSLGDLYDF SSMATLCLIG VLSVTPTLIG KKQA

Arabidopsis Description

SNARE associated Golgi protein family [Source:UniProtKB/TrEMBL;Acc:O23619]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.