Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012640.1-P | Field mustard | cytosol | 73.86 | 92.86 |
| CDX90446 | Canola | cytosol | 73.86 | 92.86 |
| CDY54781 | Canola | plasma membrane | 84.85 | 87.16 |
| Bra040182.1-P | Field mustard | plasma membrane | 83.71 | 85.99 |
| CDX78801 | Canola | plasma membrane | 83.33 | 85.6 |
| HORVU2Hr1G054810.1 | Barley | endoplasmic reticulum, extracellular | 31.82 | 77.78 |
| HORVU7Hr1G023440.1 | Barley | endoplasmic reticulum, plasma membrane | 51.89 | 76.97 |
| VIT_02s0012g01630.t01 | Wine grape | peroxisome, plasma membrane, vacuole | 73.86 | 76.77 |
| KRH39560 | Soybean | plasma membrane | 73.86 | 75.58 |
| GSMUA_Achr4P19040_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 70.83 | 75.4 |
| GSMUA_Achr4P27330_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 68.56 | 71.26 |
| GSMUA_Achr4P12280_001 | Banana | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 65.15 | 70.49 |
| Os02t0693500-01 | Rice | plasma membrane | 67.42 | 69.8 |
| GSMUA_Achr9P23350_001 | Banana | mitochondrion, plasma membrane | 64.02 | 69.26 |
| PGSC0003DMT400045191 | Potato | plasma membrane | 72.35 | 69.2 |
| Solyc08g076670.2.1 | Tomato | plasma membrane | 72.35 | 69.2 |
| Zm00001d000439_P002 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 65.53 | 68.11 |
| Os04t0592600-01 | Rice | plasma membrane, vacuole | 65.15 | 67.72 |
| EES12761 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 64.77 | 67.32 |
| KRH74398 | Soybean | golgi, peroxisome, plasma membrane | 73.11 | 67.01 |
| TraesCS2B01G468200.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 64.02 | 66.54 |
| TraesCS2D01G446700.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 64.02 | 66.54 |
| TraesCS2A01G447800.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 63.64 | 66.14 |
| EES05689 | Sorghum | plasma membrane | 62.5 | 64.96 |
| HORVU7Hr1G051100.2 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 62.12 | 64.57 |
| Zm00001d017689_P002 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 61.74 | 64.17 |
| CDY01492 | Canola | plasma membrane | 39.02 | 62.42 |
| HORVU2Hr1G049420.14 | Barley | cytosol, plastid | 63.26 | 54.58 |
| AT4G09580.1 | Thale cress | golgi, peroxisome, plasma membrane | 55.3 | 50.87 |
| AT1G71940.2 | Thale cress | plasma membrane | 56.06 | 48.37 |
| Zm00001d026194_P003 | Maize | plasma membrane | 42.8 | 43.8 |
| HORVU7Hr1G044670.7 | Barley | plasma membrane | 22.35 | 38.82 |
Protein Annotations
| MapMan:35.1 | EntrezGene:827501 | UniProt:A0A178UZQ7 | ProteinID:AEE83951.1 | EMBL:AK175186 | EMBL:AK221349 |
| ArrayExpress:AT4G17790 | EnsemblPlantsGene:AT4G17790 | RefSeq:AT4G17790 | TAIR:AT4G17790 | RefSeq:AT4G17790-TAIR-G | EnsemblPlants:AT4G17790.1 |
| TAIR:AT4G17790.1 | ProteinID:CAB10559.1 | ProteinID:CAB78782.1 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | RefSeq:NP_567541.1 | UniProt:O23619 | ProteinID:OAO98171.1 | PFAM:PF09335 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR43220 | PANTHER:PTHR43220:SF6 | InterPro:SNARE_assoc | TMHMM:TMhelix |
| UniParc:UPI00000A2156 | SEG:seg | : | : | : | : |
Description
SNARE associated Golgi protein family [Source:UniProtKB/TrEMBL;Acc:O23619]
Coordinates
chr4:+:9891051..9893057
Molecular Weight (calculated)
28928.0 Da
IEP (calculated)
7.122
GRAVY (calculated)
0.685
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKEEGETTT TIGVVPAAPA KLPTPIYSLS FWEVTAASGV VLGFILGLVC VYLTMPQSDY SFLKLPRNLE DLQILRDNLE IYTSDYTVQV LVGYCLVYVF
101: MQTFMIPGTV FMSLLAGALF GVVKGMALVV STATAGASSC YFLSKLIGRP LLFSLWPDKL VFFQDQVARR KDRLLNYMLF LRLTPTLPNT FINVASPIVD
201: VPYHIFFLAT FIGLIPAAFV TVRAGLALGE LKSLGDLYDF SSMATLCLIG VLSVTPTLIG KKQA
101: MQTFMIPGTV FMSLLAGALF GVVKGMALVV STATAGASSC YFLSKLIGRP LLFSLWPDKL VFFQDQVARR KDRLLNYMLF LRLTPTLPNT FINVASPIVD
201: VPYHIFFLAT FIGLIPAAFV TVRAGLALGE LKSLGDLYDF SSMATLCLIG VLSVTPTLIG KKQA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.