Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, golgi, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra038380.1-P | Field mustard | plasma membrane | 90.24 | 94.18 |
| CDX75108 | Canola | plasma membrane | 90.24 | 94.18 |
| CDY48052 | Canola | plasma membrane | 90.24 | 94.18 |
| VIT_18s0072g01050.t01 | Wine grape | cytosol, golgi, peroxisome | 75.61 | 77.78 |
| PGSC0003DMT400067170 | Potato | plasma membrane | 75.26 | 76.6 |
| Solyc06g065400.2.1 | Tomato | plasma membrane | 74.91 | 76.24 |
| PGSC0003DMT400002299 | Potato | golgi, peroxisome, plasma membrane | 73.17 | 73.68 |
| GSMUA_Achr6P04140_001 | Banana | plasma membrane | 68.29 | 71.79 |
| GSMUA_Achr6P06250_001 | Banana | plasma membrane | 68.29 | 71.79 |
| HORVU4Hr1G006740.1 | Barley | endoplasmic reticulum, plasma membrane | 59.58 | 70.66 |
| GSMUA_Achr7P11860_001 | Banana | peroxisome | 67.6 | 70.04 |
| AT1G71940.2 | Thale cress | plasma membrane | 68.99 | 64.71 |
| EER93600 | Sorghum | peroxisome, plasma membrane, plastid | 62.37 | 64.16 |
| Zm00001d033664_P001 | Maize | peroxisome | 61.67 | 63.9 |
| TraesCS4A01G272200.1 | Wheat | plasma membrane | 62.02 | 63.57 |
| TraesCS4B01G041800.1 | Wheat | plasma membrane | 62.02 | 63.35 |
| TraesCS4D01G039000.1 | Wheat | plasma membrane | 61.67 | 62.77 |
| Os03t0703900-01 | Rice | peroxisome | 59.93 | 62.09 |
| Solyc11g018620.1.1 | Tomato | endoplasmic reticulum, plasma membrane | 73.87 | 61.99 |
| AT4G17790.1 | Thale cress | plasma membrane | 50.87 | 55.3 |
Protein Annotations
| MapMan:35.1 | EntrezGene:826542 | ProteinID:AEE82767.1 | ArrayExpress:AT4G09580 | EnsemblPlantsGene:AT4G09580 | RefSeq:AT4G09580 |
| TAIR:AT4G09580 | RefSeq:AT4G09580-TAIR-G | EnsemblPlants:AT4G09580.1 | TAIR:AT4G09580.1 | EMBL:AY096649 | EMBL:AY114042 |
| ProteinID:CAB78081.1 | ProteinID:CAB82125.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005789 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_192696.3 |
| PFAM:PF09335 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0005052 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR43220 | PANTHER:PTHR43220:SF3 | UniProt:Q8L586 |
| InterPro:SNARE_assoc | TMHMM:TMhelix | UniParc:UPI00000A4CEF | SEG:seg | : | : |
Description
Uncharacterized membrane protein At4g09580 [Source:UniProtKB/Swiss-Prot;Acc:Q8L586]
Coordinates
chr4:-:6052352..6054454
Molecular Weight (calculated)
32140.8 Da
IEP (calculated)
10.166
GRAVY (calculated)
0.407
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAPRNLTGD GGARQLVKDE ESPAASSAAK GLLNDDSPTG KRTKSERFPL SRWEFAVFFT VFLVFTTGLF CIYLTMPAAE YGKLKVPRTI SDLRLLKENL
101: GSYASEYQAR FILGYCSTYI FMQTFMIPGT IFMSLLAGAL FGVVRGFVLV VLNATAGACS CFFLSKLVGR PLVNWLWPEK LRFFQAEIAK RRDRLLNYML
201: FLRITPTLPN LFINLSSPIV DIPFHVFFLA TLVGLMPASY ITVRAGLALG DLRSVKDLYD FKTLSVLFLI GSISIFPALL KRKRVYE
101: GSYASEYQAR FILGYCSTYI FMQTFMIPGT IFMSLLAGAL FGVVRGFVLV VLNATAGACS CFFLSKLVGR PLVNWLWPEK LRFFQAEIAK RRDRLLNYML
201: FLRITPTLPN LFINLSSPIV DIPFHVFFLA TLVGLMPASY ITVRAGLALG DLRSVKDLYD FKTLSVLFLI GSISIFPALL KRKRVYE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.