Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G006740.1 | Barley | endoplasmic reticulum, plasma membrane | 85.77 | 99.59 |
| TraesCS4A01G272200.1 | Wheat | plasma membrane | 97.86 | 98.21 |
| TraesCS4D01G039000.1 | Wheat | plasma membrane | 98.22 | 97.87 |
| Zm00001d033664_P001 | Maize | peroxisome | 88.26 | 89.53 |
| EER93600 | Sorghum | peroxisome, plasma membrane, plastid | 87.9 | 88.53 |
| Os03t0703900-01 | Rice | peroxisome | 85.77 | 87.0 |
| GSMUA_Achr6P04140_001 | Banana | plasma membrane | 67.97 | 69.96 |
| GSMUA_Achr6P06250_001 | Banana | plasma membrane | 67.97 | 69.96 |
| GSMUA_Achr7P11860_001 | Banana | peroxisome | 67.62 | 68.59 |
| KRG91806 | Soybean | plasma membrane | 64.41 | 66.79 |
| KRH34979 | Soybean | nucleus, peroxisome, plasma membrane | 64.06 | 66.42 |
| CDX96363 | Canola | plasma membrane | 63.35 | 65.44 |
| Bra016097.1-P | Field mustard | plasma membrane | 63.35 | 65.44 |
| CDX72847 | Canola | plasma membrane | 62.99 | 65.07 |
| VIT_18s0072g01050.t01 | Wine grape | cytosol, golgi, peroxisome | 63.7 | 64.16 |
| Solyc06g065400.2.1 | Tomato | plasma membrane | 64.06 | 63.83 |
| PGSC0003DMT400067170 | Potato | plasma membrane | 64.06 | 63.83 |
| CDX82201 | Canola | peroxisome | 62.63 | 63.77 |
| Bra003904.1-P | Field mustard | peroxisome | 62.63 | 63.54 |
| CDX75108 | Canola | plasma membrane | 61.92 | 63.27 |
| Bra038380.1-P | Field mustard | plasma membrane | 61.57 | 62.91 |
| CDY48052 | Canola | plasma membrane | 61.57 | 62.91 |
| AT4G09580.1 | Thale cress | golgi, peroxisome, plasma membrane | 63.35 | 62.02 |
| PGSC0003DMT400002299 | Potato | golgi, peroxisome, plasma membrane | 62.63 | 61.75 |
| TraesCS2B01G468200.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 49.82 | 55.12 |
| AT1G71940.2 | Thale cress | plasma membrane | 59.43 | 54.58 |
| Solyc11g018620.1.1 | Tomato | endoplasmic reticulum, plasma membrane | 62.28 | 51.17 |
| CDY03670 | Canola | peroxisome | 35.94 | 49.03 |
| Bra007997.1-P | Field mustard | plasma membrane | 35.59 | 48.54 |
| CDX68293 | Canola | cytosol, nucleus, plasma membrane, plastid | 64.06 | 39.05 |
| CDY36672 | Canola | cytosol, nucleus, plasma membrane | 61.92 | 38.41 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G041800.1 | EnsemblPlantsGene:TraesCS4B01G041800 | InterPro:SNARE_assoc | PANTHER:PTHR43220 | PANTHER:PTHR43220:SF3 | PFAM:PF09335 |
| SEG:seg | TMHMM:TMhelix | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr4B:+:28711339..28714203
Molecular Weight (calculated)
30647.2 Da
IEP (calculated)
10.419
GRAVY (calculated)
0.570
Length
281 amino acids
Sequence
(BLAST)
(BLAST)
001: MLFARRDIEA AGAGAGAGQD GSPAAKKGKP ESAAAAAVAR PTLTRTEALA AAAVLALFVA GIFCIFLAAP RREFGQILRL PRSLADVRLL KDNLAVYASE
101: HQANFVLGYC SIYIFMQTFM IPGTIFMSLL AGALFGVIKG GVLVVFTATA GASSCYFLSK LIGRPLVCWL WPERLRYFQS EIAKRKDKLL NYMLFLRITP
201: TLPNTFINMA SPIVDIPFHI FFAATLIGLI PASYITVKAG RALGDLRSVR ELYDFKTLVV LFLIGSVVVV PTILKRKRTY E
101: HQANFVLGYC SIYIFMQTFM IPGTIFMSLL AGALFGVIKG GVLVVFTATA GASSCYFLSK LIGRPLVCWL WPERLRYFQS EIAKRKDKLL NYMLFLRITP
201: TLPNTFINMA SPIVDIPFHI FFAATLIGLI PASYITVKAG RALGDLRSVR ELYDFKTLVV LFLIGSVVVV PTILKRKRTY E
001: MAAPRNLTGD GGARQLVKDE ESPAASSAAK GLLNDDSPTG KRTKSERFPL SRWEFAVFFT VFLVFTTGLF CIYLTMPAAE YGKLKVPRTI SDLRLLKENL
101: GSYASEYQAR FILGYCSTYI FMQTFMIPGT IFMSLLAGAL FGVVRGFVLV VLNATAGACS CFFLSKLVGR PLVNWLWPEK LRFFQAEIAK RRDRLLNYML
201: FLRITPTLPN LFINLSSPIV DIPFHVFFLA TLVGLMPASY ITVRAGLALG DLRSVKDLYD FKTLSVLFLI GSISIFPALL KRKRVYE
101: GSYASEYQAR FILGYCSTYI FMQTFMIPGT IFMSLLAGAL FGVVRGFVLV VLNATAGACS CFFLSKLVGR PLVNWLWPEK LRFFQAEIAK RRDRLLNYML
201: FLRITPTLPN LFINLSSPIV DIPFHVFFLA TLVGLMPASY ITVRAGLALG DLRSVKDLYD FKTLSVLFLI GSISIFPALL KRKRVYE
Arabidopsis Description
Uncharacterized membrane protein At4g09580 [Source:UniProtKB/Swiss-Prot;Acc:Q8L586]
SUBAcon: [peroxisome,golgi,plasma membrane]
SUBAcon: [peroxisome,golgi,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.