Factsheet for Bra007997.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 3
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, nucleus, peroxisome, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY03670	Canola	peroxisome	99.51	99.51
Bra003904.1-P	Field mustard	peroxisome	87.38	64.98
Bra016097.1-P	Field mustard	plasma membrane	83.01	62.87
VIT_18s0072g01050.t01	Wine grape	cytosol, golgi, peroxisome	67.96	50.18
AT1G71940.2	Thale cress	plasma membrane	73.3	49.35
Solyc06g065400.2.1	Tomato	plasma membrane	67.48	49.29
Bra038380.1-P	Field mustard	plasma membrane	65.53	49.09
PGSC0003DMT400067170	Potato	plasma membrane	66.99	48.94
KRG91806	Soybean	plasma membrane	63.59	48.34
KRH34979	Soybean	nucleus, peroxisome, plasma membrane	62.14	47.23
PGSC0003DMT400002299	Potato	golgi, peroxisome, plasma membrane	64.08	46.32
GSMUA_Achr6P04140_001	Banana	plasma membrane	58.25	43.96
GSMUA_Achr6P06250_001	Banana	plasma membrane	57.77	43.59
GSMUA_Achr7P11860_001	Banana	peroxisome	57.77	42.96
HORVU4Hr1G006740.1	Barley	endoplasmic reticulum, plasma membrane	46.12	39.26
Solyc11g018620.1.1	Tomato	endoplasmic reticulum, plasma membrane	65.05	39.18
EER93600	Sorghum	peroxisome, plasma membrane, plastid	50.97	37.63
Zm00001d033664_P001	Maize	peroxisome	50.0	37.18
Os03t0703900-01	Rice	peroxisome	48.06	35.74
TraesCS4A01G272200.1	Wheat	plasma membrane	48.54	35.71
TraesCS4B01G041800.1	Wheat	plasma membrane	48.54	35.59
TraesCS4D01G039000.1	Wheat	plasma membrane	48.54	35.46
Bra040182.1-P	Field mustard	plasma membrane	42.23	33.85
Bra012640.1-P	Field mustard	cytosol	32.52	31.9

Protein Annotations

EnsemblPlants:Bra007997.1	EnsemblPlants:Bra007997.1-P	EnsemblPlantsGene:Bra007997	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR43220	PANTHER:PTHR43220:SF3	TMHMM:TMhelix	UniParc:UPI0002546E16	UniProt:M4CUV2	MapMan:35.1

Description

AT1G71940 (E=2e-043) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09580.1); Has 2462 Blast hits to 2462 proteins in 530 species: Archae - 4; Bacteria - 1186; Metazoa - 194; Fungi - 22; Plants - 141; Viruses - 0; Other Eukaryotes - 915 (source: NCBI BLink).

Coordinates

chrA02:+:12425356..12426468

Molecular Weight (calculated)

23063.3 Da

IEP (calculated)

8.654

GRAVY (calculated)

0.214

Length

206 amino acids

Sequence
(BLAST)

001: MTKIDFSFDP CMHSVMAPTR NLIRDEELGT ISDEDDSPSG KRSKLDRFPL SRWELAVSLG VFLVFSSGLF CIYITMPSAE FGKLKLPRSI SDLRLLKDNL
101: ANYANEYPEP ANNARTKLLE KGITPTLPNL FINLASPIVD VPFHVFFLAT LVGLIPAAYI TVRASLAIGD LKSVKDLYDF KTLSVLFLIG FISILPTILK
201: RKKIYE

Best Arabidopsis Sequence Match ( AT1G71940.1 )
(BLAST)

001: MAPTRILTRD EELGVISDDD DSPSGKRSKL DRFPLSRWEL AVSLGVFLVF SSGLCCIYMT MPAAEFGKLK LPRSLADLRL LKDNLANYAN EYPAQFVLGY
101: CATYIFMQTF MIPGTIFMSL LAGALFGVFK GVVLVVFNAT AGATSCFFLS KLIGRPLITW LWPDKLRFFQ AEISKRRDKL LNYMLFLRIT PTLPNLFINL
201: ASPIVDVPFH VFFLATLIGL IPAAYITVRA GLAIGDLKSV KDLYDFKTLS VLFLIGFISI LPTILKRKKI VE

Arabidopsis Description

SNARE associated Golgi protein family [Source:UniProtKB/TrEMBL;Acc:F4IBM1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.