Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G006740.1 | Barley | endoplasmic reticulum, plasma membrane | 85.46 | 99.59 |
| TraesCS4A01G272200.1 | Wheat | plasma membrane | 98.23 | 98.93 |
| TraesCS4B01G041800.1 | Wheat | plasma membrane | 97.87 | 98.22 |
| Zm00001d033664_P001 | Maize | peroxisome | 87.94 | 89.53 |
| EER93600 | Sorghum | peroxisome, plasma membrane, plastid | 88.3 | 89.25 |
| Os03t0703900-01 | Rice | peroxisome | 86.17 | 87.73 |
| GSMUA_Achr6P04140_001 | Banana | plasma membrane | 68.09 | 70.33 |
| GSMUA_Achr6P06250_001 | Banana | plasma membrane | 68.09 | 70.33 |
| GSMUA_Achr7P11860_001 | Banana | peroxisome | 67.73 | 68.95 |
| KRG91806 | Soybean | plasma membrane | 64.18 | 66.79 |
| KRH34979 | Soybean | nucleus, peroxisome, plasma membrane | 63.83 | 66.42 |
| CDX96363 | Canola | plasma membrane | 62.77 | 65.07 |
| Bra016097.1-P | Field mustard | plasma membrane | 62.77 | 65.07 |
| CDX72847 | Canola | plasma membrane | 62.41 | 64.71 |
| Solyc06g065400.2.1 | Tomato | plasma membrane | 64.18 | 64.18 |
| PGSC0003DMT400067170 | Potato | plasma membrane | 64.18 | 64.18 |
| VIT_18s0072g01050.t01 | Wine grape | cytosol, golgi, peroxisome | 63.48 | 64.16 |
| Bra003904.1-P | Field mustard | peroxisome | 62.77 | 63.9 |
| CDX82201 | Canola | peroxisome | 62.06 | 63.41 |
| CDX75108 | Canola | plasma membrane | 61.35 | 62.91 |
| Bra038380.1-P | Field mustard | plasma membrane | 60.99 | 62.55 |
| CDY48052 | Canola | plasma membrane | 60.99 | 62.55 |
| PGSC0003DMT400002299 | Potato | golgi, peroxisome, plasma membrane | 62.41 | 61.75 |
| AT4G09580.1 | Thale cress | golgi, peroxisome, plasma membrane | 62.77 | 61.67 |
| TraesCS2D01G446700.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 49.29 | 54.72 |
| AT1G71940.2 | Thale cress | plasma membrane | 58.87 | 54.25 |
| Solyc11g018620.1.1 | Tomato | endoplasmic reticulum, plasma membrane | 62.06 | 51.17 |
| CDY03670 | Canola | peroxisome | 35.82 | 49.03 |
| Bra007997.1-P | Field mustard | plasma membrane | 35.46 | 48.54 |
| CDX68293 | Canola | cytosol, nucleus, plasma membrane, plastid | 64.18 | 39.26 |
| CDY36672 | Canola | cytosol, nucleus, plasma membrane | 62.06 | 38.63 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G039000.1 | EnsemblPlantsGene:TraesCS4D01G039000 | InterPro:SNARE_assoc | PANTHER:PTHR43220 | PANTHER:PTHR43220:SF3 | PFAM:PF09335 |
| SEG:seg | TMHMM:TMhelix | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr4D:+:16793673..16796491
Molecular Weight (calculated)
30720.3 Da
IEP (calculated)
10.419
GRAVY (calculated)
0.558
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MLFARRDIEA AGAGAGAGQD GSPAAKKGKP ESAAASAAVA RPTLTRTEAL AAAAVLALFV AGIFCIFLAA PRREFGQILR LPRSLADVRL LKDNLAVYAS
101: EHQANFVLGY CSIYIFMQTF MIPGTIFMSL LAGALFGVIK GGILVVFTAT AGASSCYFLS KLIGRPLVCW LWPERLRYFQ SEIAKRKDKL LNYMLFLRIT
201: PTLPNTFINM ASPIVDIPFH IFFAATLIGL IPASYITVKA GRALGDLRSV RELYDFKTLV VLFLIGSVAV VPTILKRKRT YE
101: EHQANFVLGY CSIYIFMQTF MIPGTIFMSL LAGALFGVIK GGILVVFTAT AGASSCYFLS KLIGRPLVCW LWPERLRYFQ SEIAKRKDKL LNYMLFLRIT
201: PTLPNTFINM ASPIVDIPFH IFFAATLIGL IPASYITVKA GRALGDLRSV RELYDFKTLV VLFLIGSVAV VPTILKRKRT YE
001: MAAPRNLTGD GGARQLVKDE ESPAASSAAK GLLNDDSPTG KRTKSERFPL SRWEFAVFFT VFLVFTTGLF CIYLTMPAAE YGKLKVPRTI SDLRLLKENL
101: GSYASEYQAR FILGYCSTYI FMQTFMIPGT IFMSLLAGAL FGVVRGFVLV VLNATAGACS CFFLSKLVGR PLVNWLWPEK LRFFQAEIAK RRDRLLNYML
201: FLRITPTLPN LFINLSSPIV DIPFHVFFLA TLVGLMPASY ITVRAGLALG DLRSVKDLYD FKTLSVLFLI GSISIFPALL KRKRVYE
101: GSYASEYQAR FILGYCSTYI FMQTFMIPGT IFMSLLAGAL FGVVRGFVLV VLNATAGACS CFFLSKLVGR PLVNWLWPEK LRFFQAEIAK RRDRLLNYML
201: FLRITPTLPN LFINLSSPIV DIPFHVFFLA TLVGLMPASY ITVRAGLALG DLRSVKDLYD FKTLSVLFLI GSISIFPALL KRKRVYE
Arabidopsis Description
Uncharacterized membrane protein At4g09580 [Source:UniProtKB/Swiss-Prot;Acc:Q8L586]
SUBAcon: [peroxisome,golgi,plasma membrane]
SUBAcon: [peroxisome,golgi,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.