Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- peroxisome 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016097.1-P | Field mustard | plasma membrane | 78.1 | 87.87 |
| CDX96363 | Canola | plasma membrane | 78.1 | 87.87 |
| CDX72847 | Canola | plasma membrane | 77.78 | 87.5 |
| Bra003904.1-P | Field mustard | peroxisome | 78.76 | 87.0 |
| CDX82201 | Canola | peroxisome | 77.78 | 86.23 |
| CDY03670 | Canola | peroxisome | 49.67 | 73.79 |
| Bra007997.1-P | Field mustard | plasma membrane | 49.35 | 73.3 |
| KRG91806 | Soybean | plasma membrane | 64.38 | 72.69 |
| Solyc06g065400.2.1 | Tomato | plasma membrane | 66.01 | 71.63 |
| PGSC0003DMT400067170 | Potato | plasma membrane | 66.01 | 71.63 |
| KRH34979 | Soybean | nucleus, peroxisome, plasma membrane | 62.75 | 70.85 |
| VIT_18s0072g01050.t01 | Wine grape | cytosol, golgi, peroxisome | 64.38 | 70.61 |
| AT4G09580.1 | Thale cress | golgi, peroxisome, plasma membrane | 64.71 | 68.99 |
| PGSC0003DMT400002299 | Potato | golgi, peroxisome, plasma membrane | 62.75 | 67.37 |
| HORVU4Hr1G006740.1 | Barley | endoplasmic reticulum, plasma membrane | 52.94 | 66.94 |
| GSMUA_Achr6P06250_001 | Banana | plasma membrane | 58.5 | 65.57 |
| GSMUA_Achr6P04140_001 | Banana | plasma membrane | 58.5 | 65.57 |
| GSMUA_Achr7P11860_001 | Banana | peroxisome | 57.19 | 63.18 |
| Os03t0703900-01 | Rice | peroxisome | 54.25 | 59.93 |
| TraesCS4A01G272200.1 | Wheat | plasma membrane | 54.58 | 59.64 |
| TraesCS4B01G041800.1 | Wheat | plasma membrane | 54.58 | 59.43 |
| TraesCS4D01G039000.1 | Wheat | plasma membrane | 54.25 | 58.87 |
| Zm00001d033664_P001 | Maize | peroxisome | 53.27 | 58.84 |
| EER93600 | Sorghum | peroxisome, plasma membrane, plastid | 53.27 | 58.42 |
| Solyc11g018620.1.1 | Tomato | endoplasmic reticulum, plasma membrane | 63.4 | 56.73 |
| AT4G17790.1 | Thale cress | plasma membrane | 48.37 | 56.06 |
| CDY36672 | Canola | cytosol, nucleus, plasma membrane | 78.43 | 52.98 |
| CDX68293 | Canola | cytosol, nucleus, plasma membrane, plastid | 73.86 | 49.02 |
Protein Annotations
| MapMan:35.1 | EntrezGene:843525 | ProteinID:AEE35256.1 | ArrayExpress:AT1G71940 | EnsemblPlantsGene:AT1G71940 | RefSeq:AT1G71940 |
| TAIR:AT1G71940 | RefSeq:AT1G71940-TAIR-G | EnsemblPlants:AT1G71940.2 | TAIR:AT1G71940.2 | Unigene:At.35146 | UniProt:F4IBM1 |
| GO:GO:0003674 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_001185376.1 | PFAM:PF09335 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007095 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR43220 |
| PANTHER:PTHR43220:SF3 | InterPro:SNARE_assoc | TMHMM:TMhelix | UniParc:UPI0001E92B6B | SEG:seg | : |
Description
SNARE associated Golgi protein family [Source:UniProtKB/TrEMBL;Acc:F4IBM1]
Coordinates
chr1:+:27078524..27080248
Molecular Weight (calculated)
34635.7 Da
IEP (calculated)
9.166
GRAVY (calculated)
0.309
Length
306 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPTRILTRD EELGVISDDD DSPSGKRSKL DRFPLSRWEL AVSLGVFLVF SSGLCCIYMT MPAAEFGKLK LPRSLADLRL LKDNLANYAN EYPAQFVLGY
101: CATYIFMQTF MIPGTIFMSL LAGALFGVFK GVVLVVFNAT AGATSCFFLS KLIGRPLITW LWPDKLRFFQ AEISKRRDKL LNYMLFLRIT PTLPNLFINL
201: ASPIVDVPFH VFFLATLIGL IPAAYITVRA GLAIGDLKSV KDLYDFKTFQ GEASLQYTWP NIQCHTENKN TLNLFRGHNR TKLLIRLLVT CQITEIIQFF
301: VQDERP
101: CATYIFMQTF MIPGTIFMSL LAGALFGVFK GVVLVVFNAT AGATSCFFLS KLIGRPLITW LWPDKLRFFQ AEISKRRDKL LNYMLFLRIT PTLPNLFINL
201: ASPIVDVPFH VFFLATLIGL IPAAYITVRA GLAIGDLKSV KDLYDFKTFQ GEASLQYTWP NIQCHTENKN TLNLFRGHNR TKLLIRLLVT CQITEIIQFF
301: VQDERP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.