Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- peroxisome 1
- endoplasmic reticulum 2
- plasma membrane 3
- extracellular 1
- vacuole 1
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G09580.1 | EES12559 | AT3G60600.1 | 21798944 |
| AT4G09580.1 | EES14570 | AT3G60600.1 | 21798944 |
| AT4G09580.1 | KXG31128 | AT3G60600.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d033664_P001 | Maize | peroxisome | 97.13 | 97.83 |
| HORVU4Hr1G006740.1 | Barley | endoplasmic reticulum, plasma membrane | 78.85 | 90.91 |
| TraesCS4D01G039000.1 | Wheat | plasma membrane | 89.25 | 88.3 |
| Os03t0703900-01 | Rice | peroxisome | 87.46 | 88.09 |
| TraesCS4B01G041800.1 | Wheat | plasma membrane | 88.53 | 87.9 |
| TraesCS4A01G272200.1 | Wheat | plasma membrane | 88.17 | 87.86 |
| GSMUA_Achr6P04140_001 | Banana | plasma membrane | 70.97 | 72.53 |
| GSMUA_Achr6P06250_001 | Banana | plasma membrane | 70.97 | 72.53 |
| GSMUA_Achr7P11860_001 | Banana | peroxisome | 70.97 | 71.48 |
| KRH34979 | Soybean | nucleus, peroxisome, plasma membrane | 64.52 | 66.42 |
| KRG91806 | Soybean | plasma membrane | 64.52 | 66.42 |
| VIT_18s0072g01050.t01 | Wine grape | cytosol, golgi, peroxisome | 66.31 | 66.31 |
| PGSC0003DMT400067170 | Potato | plasma membrane | 66.67 | 65.96 |
| Solyc06g065400.2.1 | Tomato | plasma membrane | 66.31 | 65.6 |
| CDX96363 | Canola | plasma membrane | 63.8 | 65.44 |
| Bra016097.1-P | Field mustard | plasma membrane | 63.8 | 65.44 |
| CDX72847 | Canola | plasma membrane | 63.44 | 65.07 |
| Bra003904.1-P | Field mustard | peroxisome | 63.8 | 64.26 |
| CDX82201 | Canola | peroxisome | 63.08 | 63.77 |
| CDX75108 | Canola | plasma membrane | 62.72 | 63.64 |
| Bra038380.1-P | Field mustard | plasma membrane | 62.37 | 63.27 |
| CDY48052 | Canola | plasma membrane | 62.37 | 63.27 |
| PGSC0003DMT400002299 | Potato | golgi, peroxisome, plasma membrane | 64.16 | 62.81 |
| AT4G09580.1 | Thale cress | golgi, peroxisome, plasma membrane | 64.16 | 62.37 |
| EES05689 | Sorghum | plasma membrane | 50.9 | 55.91 |
| EES12761 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 50.18 | 55.12 |
| AT1G71940.2 | Thale cress | plasma membrane | 58.42 | 53.27 |
| Solyc11g018620.1.1 | Tomato | endoplasmic reticulum, plasma membrane | 63.8 | 52.05 |
| CDY03670 | Canola | peroxisome | 37.99 | 51.46 |
| Bra007997.1-P | Field mustard | plasma membrane | 37.63 | 50.97 |
| CDX68293 | Canola | cytosol, nucleus, plasma membrane, plastid | 65.23 | 39.48 |
| CDY36672 | Canola | cytosol, nucleus, plasma membrane | 63.44 | 39.07 |
Protein Annotations
| EnsemblPlants:EER93600 | EnsemblPlantsGene:SORBI_3001G122500 | EntrezGene:8063409 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:SNARE_assoc | PANTHER:PTHR43220 | PANTHER:PTHR43220:SF3 | PFAM:PF09335 | ProteinID:EER93600 | ProteinID:EER93600.1 |
| RefSeq:XP_002466602.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0001A828B3 | UniProt:C5WNS3 | MapMan:35.1 |
Description
hypothetical protein
Coordinates
chr1:-:9635488..9639300
Molecular Weight (calculated)
30598.1 Da
IEP (calculated)
10.339
GRAVY (calculated)
0.470
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMPFARRDI EAAGAGAGPG SDDSPAAKKG KPELSGARPA LTRSEALAFA AVLALFTAGI FCVFLTAPRG EFGQILRLPR SLSDVRLLKD NLAVYARDYQ
101: TNFILGYCSI YIFMQTFMIP GTIFMSLLAG ALFGVIKGGI LVVFTATAGG SSCYFVSKLI GRPLVSWLWP EKLRYFQSEI AKRREKLLNY MLFLRITPTL
201: PNTFINMASP IVDIPFHIFF AATLVGLIPA SYITVKAGRA LGDLKSVREL YDFKTLVVLF LIGSVAVVPT ILKRKRTYE
101: TNFILGYCSI YIFMQTFMIP GTIFMSLLAG ALFGVIKGGI LVVFTATAGG SSCYFVSKLI GRPLVSWLWP EKLRYFQSEI AKRREKLLNY MLFLRITPTL
201: PNTFINMASP IVDIPFHIFF AATLVGLIPA SYITVKAGRA LGDLKSVREL YDFKTLVVLF LIGSVAVVPT ILKRKRTYE
001: MAAPRNLTGD GGARQLVKDE ESPAASSAAK GLLNDDSPTG KRTKSERFPL SRWEFAVFFT VFLVFTTGLF CIYLTMPAAE YGKLKVPRTI SDLRLLKENL
101: GSYASEYQAR FILGYCSTYI FMQTFMIPGT IFMSLLAGAL FGVVRGFVLV VLNATAGACS CFFLSKLVGR PLVNWLWPEK LRFFQAEIAK RRDRLLNYML
201: FLRITPTLPN LFINLSSPIV DIPFHVFFLA TLVGLMPASY ITVRAGLALG DLRSVKDLYD FKTLSVLFLI GSISIFPALL KRKRVYE
101: GSYASEYQAR FILGYCSTYI FMQTFMIPGT IFMSLLAGAL FGVVRGFVLV VLNATAGACS CFFLSKLVGR PLVNWLWPEK LRFFQAEIAK RRDRLLNYML
201: FLRITPTLPN LFINLSSPIV DIPFHVFFLA TLVGLMPASY ITVRAGLALG DLRSVKDLYD FKTLSVLFLI GSISIFPALL KRKRVYE
Arabidopsis Description
Uncharacterized membrane protein At4g09580 [Source:UniProtKB/Swiss-Prot;Acc:Q8L586]
SUBAcon: [peroxisome,golgi,plasma membrane]
SUBAcon: [peroxisome,golgi,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.