Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 2
- endoplasmic reticulum 2
- plasma membrane 4
- extracellular 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400015077 | |
| PGSC0003DMT400050482 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G09580.1 | PGSC0003DMT400015077 | AT5G22290.1 | 21798944 |
| AT4G09580.1 | PGSC0003DMT400050482 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g065400.2.1 | Tomato | plasma membrane | 98.94 | 98.94 |
| PGSC0003DMT400002299 | Potato | golgi, peroxisome, plasma membrane | 81.91 | 81.05 |
| Bra016097.1-P | Field mustard | plasma membrane | 78.01 | 80.88 |
| CDX96363 | Canola | plasma membrane | 78.01 | 80.88 |
| CDX72847 | Canola | plasma membrane | 77.66 | 80.51 |
| Bra003904.1-P | Field mustard | peroxisome | 78.01 | 79.42 |
| CDX82201 | Canola | peroxisome | 77.66 | 79.35 |
| KRG91806 | Soybean | plasma membrane | 75.53 | 78.6 |
| VIT_18s0072g01050.t01 | Wine grape | cytosol, golgi, peroxisome | 77.66 | 78.49 |
| CDX75108 | Canola | plasma membrane | 75.53 | 77.45 |
| KRH34979 | Soybean | nucleus, peroxisome, plasma membrane | 74.11 | 77.12 |
| Bra038380.1-P | Field mustard | plasma membrane | 75.18 | 77.09 |
| CDY48052 | Canola | plasma membrane | 75.18 | 77.09 |
| AT4G09580.1 | Thale cress | golgi, peroxisome, plasma membrane | 76.6 | 75.26 |
| GSMUA_Achr6P06250_001 | Banana | plasma membrane | 71.99 | 74.36 |
| GSMUA_Achr7P11860_001 | Banana | peroxisome | 72.34 | 73.65 |
| GSMUA_Achr6P04140_001 | Banana | plasma membrane | 70.92 | 73.26 |
| HORVU4Hr1G006740.1 | Barley | endoplasmic reticulum, plasma membrane | 62.06 | 72.31 |
| CDY03670 | Canola | peroxisome | 49.29 | 67.48 |
| Bra007997.1-P | Field mustard | plasma membrane | 48.94 | 66.99 |
| EER93600 | Sorghum | peroxisome, plasma membrane, plastid | 65.96 | 66.67 |
| Os03t0703900-01 | Rice | peroxisome | 64.89 | 66.06 |
| Zm00001d033664_P001 | Maize | peroxisome | 64.89 | 66.06 |
| AT1G71940.2 | Thale cress | plasma membrane | 71.63 | 66.01 |
| TraesCS4D01G039000.1 | Wheat | plasma membrane | 64.18 | 64.18 |
| TraesCS4B01G041800.1 | Wheat | plasma membrane | 63.83 | 64.06 |
| TraesCS4A01G272200.1 | Wheat | plasma membrane | 63.48 | 63.93 |
| PGSC0003DMT400045191 | Potato | plasma membrane | 54.61 | 55.8 |
| CDY36672 | Canola | cytosol, nucleus, plasma membrane | 78.01 | 48.57 |
| CDX68293 | Canola | cytosol, nucleus, plasma membrane, plastid | 75.53 | 46.2 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400067170 | EnsemblPlantsGene:PGSC0003DMG400026114 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:SNARE_assoc |
| PANTHER:PTHR43220 | PANTHER:PTHR43220:SF3 | PFAM:PF09335 | PGSC:PGSC0003DMG400026114 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI000296A202 | UniProt:M1CGT7 | MapMan:35.1 | : | : | : |
Description
Uncharacterized membrane protein [Source:PGSC_GENE;Acc:PGSC0003DMG400026114]
Coordinates
chr6:+:46468084..46473158
Molecular Weight (calculated)
31483.5 Da
IEP (calculated)
10.260
GRAVY (calculated)
0.513
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAPRSLVVD TGRLLTRDEE MNLGLTPGAE DSPTGKRYKE GKFPLSRWEF AAALGVFVVF TVGLFSIYLT MPAAEYGKLK LPRSLSDLRM LKDNIGTYAK
101: VYPAKFILGY CSTYIFMQTF MIPGTIFMSL LAGALFGVFK GLILVVFNAT AGASSCFFLS KLIGRPLVSW LWPEKLRFFQ AEIAKRRDKL LNYMLFLRIT
201: PTLPNLFINL ASPIVDIPFH IFFSATLVGL IPAAYITVKA GLALGELKSV KDLYDLKTLS VLFLIGFISI LPTILKRKKI YE
101: VYPAKFILGY CSTYIFMQTF MIPGTIFMSL LAGALFGVFK GLILVVFNAT AGASSCFFLS KLIGRPLVSW LWPEKLRFFQ AEIAKRRDKL LNYMLFLRIT
201: PTLPNLFINL ASPIVDIPFH IFFSATLVGL IPAAYITVKA GLALGELKSV KDLYDLKTLS VLFLIGFISI LPTILKRKKI YE
001: MAPTRILTRD EELGVISDDD DSPSGKRSKL DRFPLSRWEL AVSLGVFLVF SSGLCCIYMT MPAAEFGKLK LPRSLADLRL LKDNLANYAN EYPAQFVLGY
101: CATYIFMQTF MIPGTIFMSL LAGALFGVFK GVVLVVFNAT AGATSCFFLS KLIGRPLITW LWPDKLRFFQ AEISKRRDKL LNYMLFLRIT PTLPNLFINL
201: ASPIVDVPFH VFFLATLIGL IPAAYITVRA GLAIGDLKSV KDLYDFKTLS VLFLIGFISI LPTILKRKKI VE
101: CATYIFMQTF MIPGTIFMSL LAGALFGVFK GVVLVVFNAT AGATSCFFLS KLIGRPLITW LWPDKLRFFQ AEISKRRDKL LNYMLFLRIT PTLPNLFINL
201: ASPIVDVPFH VFFLATLIGL IPAAYITVRA GLAIGDLKSV KDLYDFKTLS VLFLIGFISI LPTILKRKKI VE
Arabidopsis Description
SNARE associated Golgi protein family [Source:UniProtKB/TrEMBL;Acc:F4IBM1]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.