Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g074170.2.1 | Tomato | nucleus | 95.59 | 95.35 |
| PGSC0003DMT400050482 | Potato | nucleus | 66.42 | 63.02 |
| KRH22653 | Soybean | nucleus | 46.32 | 50.94 |
| VIT_06s0080g00970.t01 | Wine grape | nucleus | 48.04 | 50.52 |
| PGSC0003DMT400018364 | Potato | mitochondrion, nucleus | 13.48 | 47.41 |
| CDX70995 | Canola | cytosol | 34.8 | 42.52 |
| CDY35676 | Canola | cytoskeleton, cytosol, nucleus | 35.54 | 42.27 |
| AT5G22290.1 | Thale cress | cytosol | 35.05 | 42.06 |
| CDX88803 | Canola | cytosol | 34.56 | 41.84 |
| CDX92368 | Canola | cytosol | 34.31 | 41.79 |
| CDY09128 | Canola | cytosol | 35.05 | 41.69 |
| Bra020182.1-P | Field mustard | cytosol | 35.05 | 41.69 |
| Bra002403.1-P | Field mustard | cytosol | 33.09 | 41.67 |
| Bra006619.1-P | Field mustard | cytosol | 34.31 | 41.54 |
| Bra021471.1-P | Field mustard | cytosol, golgi, nucleus | 34.07 | 41.12 |
| CDY20351 | Canola | cytosol, golgi, nucleus | 34.07 | 41.0 |
| CDY34714 | Canola | cytosol, golgi, nucleus | 33.82 | 40.83 |
| AT3G44290.1 | Thale cress | cytosol | 33.33 | 40.6 |
| KRH26664 | Soybean | nucleus | 44.61 | 36.92 |
| CDY34716 | Canola | nucleus | 26.23 | 36.39 |
| PGSC0003DMT400079749 | Potato | nucleus | 21.32 | 34.8 |
| PGSC0003DMT400045129 | Potato | nucleus | 21.57 | 26.43 |
| PGSC0003DMT400079791 | Potato | nucleus | 24.02 | 24.5 |
| PGSC0003DMT400060087 | Potato | nucleus | 22.06 | 23.02 |
| PGSC0003DMT400055322 | Potato | nucleus | 25.49 | 18.51 |
| PGSC0003DMT400060090 | Potato | nucleus | 22.79 | 17.38 |
| PGSC0003DMT400079789 | Potato | cytosol, nucleus, plastid | 22.55 | 16.94 |
| PGSC0003DMT400001498 | Potato | nucleus | 25.74 | 16.46 |
| PGSC0003DMT400069511 | Potato | nucleus | 25.25 | 16.35 |
| PGSC0003DMT400073779 | Potato | nucleus | 20.1 | 15.13 |
| PGSC0003DMT400043681 | Potato | nucleus | 21.08 | 14.68 |
| PGSC0003DMT400079995 | Potato | nucleus | 23.28 | 10.54 |
Protein Annotations
| EntrezGene:102603233 | MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR003441 | InterPro:IPR036093 | UniProt:M1A5E5 | InterPro:NAC-dom |
| InterPro:NAC_dom_sf | PFAM:PF02365 | EnsemblPlantsGene:PGSC0003DMG400005892 | PGSC:PGSC0003DMG400005892 | EnsemblPlants:PGSC0003DMT400015077 | PFscan:PS51005 |
| PANTHER:PTHR31989 | PANTHER:PTHR31989:SF40 | SUPFAM:SSF101941 | TMHMM:TMhelix | UniParc:UPI000295F5CD | RefSeq:XP_006361089.1 |
| SEG:seg | : | : | : | : | : |
Description
Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400005892]
Coordinates
chr6:-:54733449..54738086
Molecular Weight (calculated)
46143.7 Da
IEP (calculated)
9.322
GRAVY (calculated)
-0.610
Length
408 amino acids
Sequence
(BLAST)
(BLAST)
001: MENGHVSSSS RNERTPRNNN TEISIATASS MFPGFRFSPT DEELISYYLK KKLEGSDKCV EVISEVEIWK HEPWDLPDKS VIQSDNEWFF FSPRGRKYPN
101: GSQSKRATES GYWKATGKER NVKSSSNIIG TKRTLVFHTG RAPKGQRTQW IMHEYCMIGN TNYQDSMVVC RLRKNSEFHL NDTPRNQRNQ LVATESATAL
201: SGAGQLGSLE LVNVGECCSK EGSSSFHSHS VEQIDSGSES DKQTKEFSQH DSSGHFKDCD VEEDWFADIM KDDIIKLDDS SLNPRPISMI PDRPESSEIS
301: NHEAQAAMSS VVPFQGTANR RLRQVREIVM KCRVKGSKPY KAMKKNKVGV GATSSARWLR NMLSVKWMRQ YVIPIFVATL IFLVMLLSLL GVSQQVKQRR
401: HLLVLASS
101: GSQSKRATES GYWKATGKER NVKSSSNIIG TKRTLVFHTG RAPKGQRTQW IMHEYCMIGN TNYQDSMVVC RLRKNSEFHL NDTPRNQRNQ LVATESATAL
201: SGAGQLGSLE LVNVGECCSK EGSSSFHSHS VEQIDSGSES DKQTKEFSQH DSSGHFKDCD VEEDWFADIM KDDIIKLDDS SLNPRPISMI PDRPESSEIS
301: NHEAQAAMSS VVPFQGTANR RLRQVREIVM KCRVKGSKPY KAMKKNKVGV GATSSARWLR NMLSVKWMRQ YVIPIFVATL IFLVMLLSLL GVSQQVKQRR
401: HLLVLASS
001: MDTKAVGVSK DTAASMEAST VFPGFKFSPT DVELISYYLK RKMDGLERSV EVIPDLEIYN FEPWDLPDKS IVKSDSEWFF FCARGKKYPH GSQNRRATKM
101: GYWKATGKER DVKSGSEVIG TKRTLVFHIG RAPKGERTDW IMHEYCVKGV SLDDAMVVCR VRRNKEYNSG TSQKAPKPNS SAEKHAKVQN GATSSGSPSD
201: WDNLVDFYLA GESGEKLLAE MAESSENLQV DNDEDFFADI LRDEIINLDE AVMTGNTPNE VPTLESASME IRVLPLPNMI DKQMSSLLEE RPSQKKKGKD
301: ATESLSSCFV GLYSIKSVNK ARWDVIIGVV ALIAMLFYLE
101: GYWKATGKER DVKSGSEVIG TKRTLVFHIG RAPKGERTDW IMHEYCVKGV SLDDAMVVCR VRRNKEYNSG TSQKAPKPNS SAEKHAKVQN GATSSGSPSD
201: WDNLVDFYLA GESGEKLLAE MAESSENLQV DNDEDFFADI LRDEIINLDE AVMTGNTPNE VPTLESASME IRVLPLPNMI DKQMSSLLEE RPSQKKKGKD
301: ATESLSSCFV GLYSIKSVNK ARWDVIIGVV ALIAMLFYLE
Arabidopsis Description
NAC089NAC domain-containing protein 89 [Source:UniProtKB/Swiss-Prot;Acc:Q94F58]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.