Factsheet for PGSC0003DMT400018364

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079749	Potato	nucleus	66.38	30.8
GSMUA_Achr1P02820_001	Banana	nucleus	75.0	23.39
GSMUA_AchrUn_...	Banana	nucleus	70.69	23.1
GSMUA_Achr11P...	Banana	nucleus	74.14	22.45
PGSC0003DMT400045129	Potato	nucleus	57.76	20.12
CDY21216	Canola	nucleus	67.24	18.14
Bra032009.1-P	Field mustard	nucleus	72.41	17.57
CDY43143	Canola	nucleus	72.41	17.57
AT3G03200.1	Thale cress	nucleus	72.41	17.54
CDY28745	Canola	cytosol	71.55	17.36
AT5G17260.1	Thale cress	nucleus	70.69	17.23
CDY49932	Canola	nucleus	70.69	17.12
Bra021366.1-P	Field mustard	nucleus	70.69	17.08
CDX78734	Canola	cytosol	71.55	16.94
Bra006392.1-P	Field mustard	cytosol	71.55	16.94
CDY16943	Canola	nucleus	72.41	16.9
CDX70745	Canola	cytosol	71.55	16.8
PGSC0003DMT400079791	Potato	nucleus	57.76	16.75
PGSC0003DMT400055322	Potato	nucleus	78.45	16.19
PGSC0003DMT400060087	Potato	nucleus	54.31	16.11
Bra039745.1-P	Field mustard	nucleus	74.14	15.75
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	75.0	15.65
GSMUA_Achr8P13430_001	Banana	nucleus	77.59	14.83
CDY60870	Canola	nucleus	73.28	14.73
VIT_04s0079g00280.t01	Wine grape	cytosol, nucleus, plasma membrane	84.48	14.67
KRH17271	Soybean	cytosol, nucleus, plasma membrane	81.03	14.6
KRH72917	Soybean	cytosol, nucleus, plasma membrane	79.31	14.31
Os03t0119966-01	Rice	nucleus	80.17	14.31
CDY16427	Canola	nucleus	73.28	14.29
AT1G65910.1	Thale cress	nucleus	75.86	13.95
Zm00001d027395_P009	Maize	nucleus	78.45	13.7
KRH30885	Soybean	cytosol, nucleus, vacuole	78.45	13.54
HORVU4Hr1G085320.1	Barley	cytosol, nucleus, peroxisome	80.17	13.5
PGSC0003DMT400015077	Potato	nucleus	47.41	13.48
TraesCS4B01G350600.1	Wheat	cytosol, nucleus, peroxisome	80.17	13.46
TraesCS5A01G519300.1	Wheat	cytosol, nucleus, peroxisome	80.17	13.4
EER95621	Sorghum	nucleus	78.45	13.34
TraesCS4D01G345300.1	Wheat	cytosol, nucleus, peroxisome	80.17	13.32
KRG98003	Soybean	cytosol, nucleus, plasma membrane	77.59	13.27
Zm00001d048493_P004	Maize	nucleus	78.45	13.25
PGSC0003DMT400050482	Potato	nucleus	47.41	12.79
PGSC0003DMT400060090	Potato	nucleus	54.31	11.78
PGSC0003DMT400079789	Potato	cytosol, nucleus, plastid	54.31	11.6
Bra008567.1-P	Field mustard	nucleus	43.1	11.19
PGSC0003DMT400043681	Potato	nucleus	55.17	10.92
PGSC0003DMT400073779	Potato	nucleus	48.28	10.33
Solyc02g081270.2.1	Tomato	nucleus	91.38	10.3
PGSC0003DMT400001498	Potato	nucleus	50.0	9.09
PGSC0003DMT400069511	Potato	nucleus	48.28	8.89
PGSC0003DMT400079995	Potato	nucleus	56.03	7.21

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003441
InterPro:IPR036093	UniProt:M1AAH7	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	EnsemblPlantsGene:PGSC0003DMG400007130
PGSC:PGSC0003DMG400007130	EnsemblPlants:PGSC0003DMT400018364	PFscan:PS51005	PANTHER:PTHR31989	PANTHER:PTHR31989:SF6	SUPFAM:SSF101941
UniParc:UPI000295DC0D	:	:	:	:	:

Description

Gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400007130]

Coordinates

chr6:+:55292329..55292960

Molecular Weight (calculated)

13589.1 Da

IEP (calculated)

10.542

GRAVY (calculated)

-1.086

Length

116 amino acids

Sequence
(BLAST)

001: MIKREGFRLS SNPKGKSLLP SKDLEWYFFS PRDRKYPNGS RTNRATKAGY WKATGKDRKV NSQTRAVGMK KTLVYYRGRA PHGARTDWVM HEYRLDEREC
101: EVANGLQDAY AKYLTY

Best Arabidopsis Sequence Match ( AT1G65910.1 )
(BLAST)

001: MAPVSMPPGF RFHPTDEELV IYYLKRKING RTIELEIIPE IDLYKCEPWD LPGKSLLPSK DLEWFFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVTS
101: HSRMVGTKKT LVYYRGRAPH GSRTDWVMHE YRLEEQECDS KSGIQDAYAL CRVFKKSALA NKIEEQHHGT KKNKGTTNSE QSTSSTCLYS DGMYENLENS
201: GYPVSPETGG LTQLGNNSSS DMETIENKWS QFMSHDTSFN FPPQSQYGTI SYPPSKVDIA LECARLQNRM LPPVPPLYVE GLTHNEYFGN NVANDTDEML
301: SKIIALAQAS HEPRNSLDSW DGGSASGNFH GDFNYSGEKV SCLEANVEAV DMQEHHVNFK EERLVENLRW VGVSSKELEK SFVEEHSTVI PIEDIWRYHN
401: DNQEQEHHDQ DGMDVNNNNG DVDDAFTLEF SENEHNENLL DKNDHETTSS SCFEVVKKVE VSHGLFVTTR QVTNTFFQQI VPSQTVIVYI NPTDGNECCH
501: SMTSKEEVHV RKKINPRING VSSTVLGQWR KFAHVIGFIP MLLLMRCVHR GNSNKNRGSE GYSRQPTRGD CNNRGTILMM ENAVVRRKIW KKKKEKNMVD
601: EQGFRFQDSF VLKKLGLSLA IILAVSTISL I

Arabidopsis Description

anac028NAC028 [Source:UniProtKB/TrEMBL;Acc:A0A178W7T7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.