Factsheet for PGSC0003DMT400073779

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g005920.1.1	Tomato	nucleus	82.66	65.21
PGSC0003DMT400018364	Potato	mitochondrion, nucleus	10.33	48.28
GSMUA_Achr10P...	Banana	nucleus	22.14	46.69
HORVU0Hr1G000630.1	Barley	nucleus	22.88	46.62
TraesCS5A01G220900.1	Wheat	cytosol	19.56	45.49
KRH43549	Soybean	cytosol	24.17	40.56
CDX81124	Canola	nucleus	25.28	40.06
CDY44793	Canola	nucleus	25.28	39.14
Bra024263.1-P	Field mustard	nucleus	23.99	37.79
CDY43785	Canola	nucleus	23.99	37.79
AT5G64060.1	Thale cress	nucleus	24.72	37.64
KRH59567	Soybean	cytosol, golgi, nucleus	21.96	37.54
CDX84485	Canola	nucleus	23.8	37.28
PGSC0003DMT400079749	Potato	nucleus	17.16	37.2
VIT_04s0044g01220.t01	Wine grape	nucleus	38.38	37.14
HORVU2Hr1G045580.1	Barley	nucleus	23.62	36.57
HORVU7Hr1G033990.1	Barley	nucleus	23.62	36.57
TraesCS6B01G033000.1	Wheat	nucleus	23.25	34.52
CDX78356	Canola	nucleus	22.88	34.16
Bra006019.1-P	Field mustard	nucleus	22.88	34.16
Bra028640.1-P	Field mustard	nucleus	25.09	34.09
OQU82661	Sorghum	nucleus	25.28	33.83
Zm00001d002945_P010	Maize	cytosol	25.46	33.82
CDX69911	Canola	nucleus	27.31	33.79
TraesCS1D01G266500.1	Wheat	nucleus	24.54	33.67
CDY21575	Canola	nucleus	26.94	33.64
HORVU1Hr1G065570.2	Barley	nucleus	26.57	33.41
GSMUA_Achr7P23330_001	Banana	nucleus	25.09	33.33
TraesCS1A01G266300.2	Wheat	nucleus	26.2	33.1
TraesCS2D01G567000.1	Wheat	cytosol	24.72	33.0
TraesCS2B01G616900.1	Wheat	nucleus	24.72	33.0
TraesCS1B01G277300.1	Wheat	nucleus	26.2	32.87
TraesCSU01G137200.2	Wheat	cytosol, nucleus, plastid	24.54	32.76
TraesCS6A01G003800.1	Wheat	nucleus	22.69	32.63
Bra009379.1-P	Field mustard	nucleus	27.31	32.6
GSMUA_Achr11P...	Banana	nucleus	25.83	31.96
HORVU2Hr1G127550.1	Barley	nucleus	23.62	31.84
HORVU2Hr1G127510.1	Barley	nucleus	23.62	31.84
Zm00001d010227_P003	Maize	nucleus	26.01	31.69
KRH64046	Soybean	nucleus	28.23	31.68
KXG22035	Sorghum	nucleus	25.83	31.53
Zm00001d038227_P001	Maize	nucleus	25.83	30.97
Os05t0426200-02	Rice	nucleus	25.09	30.29
KRH53893	Soybean	nucleus	26.57	28.63
AT5G09330.5	Thale cress	nucleus	25.28	28.02
PGSC0003DMT400079791	Potato	nucleus	20.48	27.75
PGSC0003DMT400060087	Potato	nucleus	19.93	27.62
PGSC0003DMT400045129	Potato	nucleus	16.79	27.33
PGSC0003DMT400060090	Potato	nucleus	22.14	22.43
PGSC0003DMT400079789	Potato	cytosol, nucleus, plastid	21.59	21.55
PGSC0003DMT400015077	Potato	nucleus	15.13	20.1
PGSC0003DMT400055322	Potato	nucleus	19.93	19.22
PGSC0003DMT400050482	Potato	nucleus	14.94	18.84
PGSC0003DMT400043681	Potato	nucleus	19.56	18.09
PGSC0003DMT400069511	Potato	nucleus	17.9	15.4
PGSC0003DMT400001498	Potato	nucleus	17.9	15.2
PGSC0003DMT400079995	Potato	nucleus	21.77	13.1

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	InterPro:IPR003441	InterPro:IPR036093	UniProt:M1CSN3	InterPro:NAC-dom	InterPro:NAC_dom_sf
PFAM:PF02365	EnsemblPlantsGene:PGSC0003DMG400028662	PGSC:PGSC0003DMG400028662	EnsemblPlants:PGSC0003DMT400073779	PFscan:PS51005	PANTHER:PTHR31989
PANTHER:PTHR31989:SF46	SUPFAM:SSF101941	TMHMM:TMhelix	UniParc:UPI000296D5D7	SEG:seg	:

Description

Nam 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400028662]

Coordinates

chr11:-:6744471..6751145

Molecular Weight (calculated)

60236.9 Da

IEP (calculated)

4.621

GRAVY (calculated)

-0.435

Length

542 amino acids

Sequence
(BLAST)

001: MARLPPGFRF HPTDVELIMY YLKRKITGKK FHFEVITELN IYKFSPWDLP DKCCYKSKDL EWYFFCPRER KYASGGRMNR ATDSGYWKTT GKDRYVTYDE
101: KIVGSVKTLV FHLGHPPRGQ RTDWLIHEYK FEDKESIDAG FAQDSYVLYK VFQKSGPGPK NGAQYGAPFK EEDWEDDKIP AEPCTSDVFP APPGRPDKPS
201: TSNATRVVDP GSTSVWPSSE LSPSPIQPSV QKLPLDEPDD EELPGEPKLS NVSSINWMPS DQLKAKSSNI FSALPILPEK QSCSVDTSLA NPGPGPSNDQ
301: MCTNEMAPDE LDDEMIGLFT QFTEDTSLLS GGNETNQKLE NFHQDVNAPS AAFTDGNDIF DDLGDIEVWA RVGQLEPDLT ASGGANYSLN PVILPQDAAY
401: MELNDLDIPL NHPAETIGTG QLVPGHFCTP YNSNIGMQQL CFGSNSLGIV QDFGEHRLPT LPESYTQQVN HPDMVKPCSS FLCGMELFFS LVSHPEGLLE
501: TASLPPRGSG KVCVLLTLPR PHLVGFHWVV VVVVVVSHIF TN

Best Arabidopsis Sequence Match ( AT5G09330.1 )
(BLAST)

001: MGKTQLAPGF RFHPTDVELV RYYLKRKILG KKLLVDAIAE VDIYKFEPPD LPDMSFIRSG DLKWHFFCPR EKKYASGVRA NRATECGYWK TTGKERPVLC
101: NSEVVGKIKT LVYHFGKSPR GERTDWVMHE YRLDDKVLTQ MNVPQDTYVV CVLFKKDGPG PRNGAQYGAP FKEEDWSDEE VRTDVPSTSN PTNLLEPSKE
201: TTLALTAPDD SNKDCFGGMI SESCVSDFLP ATTNTTSELP HPSDAATTPM STAPLAETVQ TPNNDDLYSM LDLFDDDEEF LGFNNNEVRY DPGVSAPVCL
301: EEEGIFNGLP ELSSMPRTAS YDLVENSELY LELQDLTAPL NPQTGLQDLT APFNPQTGLQ DLTAPFNHQT GLQDHTAPFN PQTGLQDHTA PFNHQTGLQD
401: LTAPFNPQTG LQDLTAPFNP QTGLHDLTSP FNPQTGLQDL TAPLNPQTGN RNDPRSSSFL YNQGHFDFSG GNDDDPYGFS ASMRHRPKM

Arabidopsis Description

NAC082NAC domain-containing protein 82 [Source:UniProtKB/Swiss-Prot;Acc:Q9FY82]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.