Factsheet for PGSC0003DMT400001498

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400061606

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49530.1	PGSC0003DMT400061606	AT5G19570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g080090.2.1	Tomato	nucleus	91.54	92.85
PGSC0003DMT400069511	Potato	nucleus	53.92	54.6
PGSC0003DMT400018364	Potato	mitochondrion, nucleus	9.09	50.0
GSMUA_Achr11P...	Banana	cytosol	13.79	46.56
Bra036520.1-P	Field mustard	nucleus	27.27	39.1
CDY19828	Canola	nucleus	27.27	39.1
GSMUA_Achr2P11810_001	Banana	cytosol, mitochondrion, nucleus, plastid	17.24	37.93
CDX88115	Canola	cytosol	26.18	37.7
AT5G24590.2	Thale cress	nucleus	26.65	37.69
PGSC0003DMT400079749	Potato	nucleus	14.58	37.2
Bra009774.1-P	Field mustard	nucleus	26.33	36.92
CDX80455	Canola	nucleus	26.18	36.62
KRH72602	Soybean	nucleus	32.29	34.97
KRH53649	Soybean	nucleus	32.6	34.78
KRH16970	Soybean	nucleus	31.82	34.41
VIT_16s0098g00760.t01	Wine grape	mitochondrion	34.64	34.32
CDY00208	Canola	nucleus	23.2	34.26
Bra019599.1-P	Field mustard	nucleus	23.2	34.26
AT3G49530.1	Thale cress	nucleus	24.92	33.9
CDY08139	Canola	nucleus	24.61	33.84
KRH64275	Soybean	nucleus	31.97	33.83
CDY05939	Canola	nucleus	24.29	33.48
Bra017980.1-P	Field mustard	nucleus	24.29	33.48
PGSC0003DMT400045129	Potato	nucleus	14.26	27.33
PGSC0003DMT400060087	Potato	nucleus	16.61	27.11
PGSC0003DMT400079791	Potato	nucleus	16.14	25.75
PGSC0003DMT400015077	Potato	nucleus	16.46	25.74
PGSC0003DMT400050482	Potato	nucleus	16.93	25.12
GSMUA_Achr1P03560_001	Banana	nucleus	22.57	25.09
GSMUA_Achr4P29170_001	Banana	nucleus	22.57	25.04
Zm00001d049540_P002	Maize	cytosol	24.61	23.75
OQU79937	Sorghum	nucleus	24.61	23.64
Zm00001d024543_P001	Maize	nucleus	23.82	22.89
PGSC0003DMT400055322	Potato	nucleus	19.91	22.6
TraesCS7B01G187600.1	Wheat	nucleus	24.14	21.97
HORVU7Hr1G070780.5	Barley	nucleus	24.14	21.88
TraesCS7A01G299600.3	Wheat	nucleus	23.98	21.83
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane	25.86	21.74
TraesCS7D01G295100.1	Wheat	nucleus	23.67	21.73
Os08t0157900-01	Rice	nucleus, plasma membrane	24.61	21.54
CDX87118	Canola	nucleus	27.43	21.03
PGSC0003DMT400079789	Potato	cytosol, nucleus, plastid	17.87	20.99
PGSC0003DMT400060090	Potato	nucleus	16.93	20.19
PGSC0003DMT400073779	Potato	nucleus	15.2	17.9
PGSC0003DMT400043681	Potato	nucleus	15.2	16.55
PGSC0003DMT400079995	Potato	nucleus	15.67	11.1

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	InterPro:IPR003441	InterPro:IPR036093	UniProt:M0ZIK7	InterPro:NAC-dom	InterPro:NAC_dom_sf
PFAM:PF02365	EnsemblPlantsGene:PGSC0003DMG400000555	PGSC:PGSC0003DMG400000555	EnsemblPlants:PGSC0003DMT400001498	PFscan:PS51005	PANTHER:PTHR31989
PANTHER:PTHR31989:SF14	SUPFAM:SSF101941	TMHMM:TMhelix	UniParc:UPI000295DBF4	SEG:seg	:

Description

Nam 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400000555]

Coordinates

chr3:+:47304767..47309067

Molecular Weight (calculated)

70810.8 Da

IEP (calculated)

4.948

GRAVY (calculated)

-0.554

Length

638 amino acids

Sequence
(BLAST)

001: MAVLPGENPI AVLPVDKQMG IPPLNTLPVG YRFRPTDEEL VNHYLRLKIN GADSQVSVIR EVDICKLEPW DLPDLSVVES HDNEWFFFCP KDRKYQNGQR
101: LNRATERGYW KATGKDRNIV TKKGAKIGMK KTLVYYIGRA PEGKRTHWVI HEYRATEKSL DGSHPGQGAF VLCRLFRKND LKQDEHVENS NLDAEQNASV
201: DKSPAEDELS EAATPLMVIQ PLSDCDKSYA AKFSKGEMYG KQIPIESHSN SCIADDTEDQ MLDITSIPPV QDLEKELGNF YDPSSQPDWK IFSPLHSQMQ
301: VELGSSYLQA PFNNDICGYQ KDVQFPYGTN ALEINDFLNS ILVNSDELSC EDSGQELASH HIDTKNYSIT GPMIKDSGSC SESEAEVTQG QVDPGFFDPE
401: VLWDNFDREA AVKREVNSLE HTVLKARSPL GPSYDGNDYA VGNLGFFQNT YPGHYGYPAS IGGSQVPNFL KVEQSGVRNN VVSTESGSGT GIKLRTRQMH
501: NQPDDTQSRP QGTAHRRIRL GVKMQVGPVE CRMRSVSSQG AEIHQAVAEG EKACDEHSST TSDNTTHKDL EGVVGETDEL STRVKDADDS PVQESLDVSL
601: KTATKLSSSS HVYMSKVLVV ASLLVVFIGV WGCFRLCV

Best Arabidopsis Sequence Match ( AT3G49530.1 )
(BLAST)

001: MNQNLHVLSM DSLPVGLRFR PTDEELIRYY LRRKINGHDD DVKAIREIDI CKWEPWDLPD FSVIKTKDSE WLYFCPLDRK YPSGSRQNRA TVAGYWKATG
101: KDRKIKSGKT NIIGVKRTLV FHAGRAPRGT RTNWIIHEYR ATEDDLSGTN PGQSPFVICK LFKKEELVLG EEDSKSDEVE EPAVSSPTVE VTKSEVSEVI
201: KTEDVKRHDI AESSLVISGD SHSDACDEAT TAELVDFKWY PELESLDFTL FSPLHSQVQS ELGSSYNTFQ PGSSNFSGNN NNSFQIQTQY GTNEVDTYIS
301: DFLDSILKSP DEDPEKHKYV LQSGFDVVAP DQIAQVCQQG SAVDMSNDVS VTGIQIKSRQ AQPSGYTNDY IAQGNGPRRL RLQSNFNGIN TKNPELQAIK
401: REAEDTVGES IKKRCGKLMR SKNVTGFVFK KITSVKCSYG GLFRAAVVAV VFLMSVCSLT VDFRASAVS

Arabidopsis Description

NAC062NAC domain-containing protein 62 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCK6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.