Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr2P09220_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G49530.1 | GSMUA_Achr2P09220_001 | AT5G19570.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P11810_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 34.96 | 69.31 |
| GSMUA_Achr11P... | Banana | cytosol | 19.3 | 58.73 |
| GSMUA_Achr1P03560_001 | Banana | nucleus | 55.83 | 55.92 |
| VIT_15s0048g02310.t01 | Wine grape | cytosol | 14.61 | 50.91 |
| GSMUA_Achr3P13880_001 | Banana | cytosol | 17.74 | 42.5 |
| GSMUA_Achr9P23940_001 | Banana | cytosol | 16.87 | 40.25 |
| GSMUA_Achr6P03200_001 | Banana | cytosol | 14.61 | 39.44 |
| GSMUA_Achr10P... | Banana | nucleus | 15.65 | 35.02 |
| GSMUA_Achr3P18070_001 | Banana | nucleus | 14.43 | 33.47 |
| GSMUA_AchrUn_... | Banana | nucleus | 19.3 | 31.27 |
| CDX88115 | Canola | cytosol | 24.0 | 31.15 |
| AT4G35580.2 | Thale cress | nucleus | 28.7 | 30.9 |
| VIT_15s0048g02290.t01 | Wine grape | nucleus | 17.22 | 30.84 |
| GSMUA_Achr1P02820_001 | Banana | nucleus | 19.83 | 30.65 |
| CDX80455 | Canola | nucleus | 24.17 | 30.48 |
| Bra009774.1-P | Field mustard | nucleus | 24.0 | 30.33 |
| CDY00208 | Canola | nucleus | 22.78 | 30.32 |
| Bra019599.1-P | Field mustard | nucleus | 22.78 | 30.32 |
| GSMUA_Achr11P... | Banana | nucleus | 20.17 | 30.29 |
| AT5G24590.2 | Thale cress | nucleus | 23.13 | 29.49 |
| CDY08139 | Canola | nucleus | 23.65 | 29.31 |
| CDY05939 | Canola | nucleus | 23.48 | 29.16 |
| AT3G49530.1 | Thale cress | nucleus | 23.65 | 29.0 |
| VIT_02s0025g03020.t01 | Wine grape | nucleus | 31.83 | 28.96 |
| Bra017980.1-P | Field mustard | nucleus | 23.3 | 28.94 |
| CDY19828 | Canola | nucleus | 22.09 | 28.54 |
| Bra036520.1-P | Field mustard | nucleus | 22.09 | 28.54 |
| GSMUA_Achr5P03360_001 | Banana | nucleus | 16.7 | 26.82 |
| GSMUA_AchrUn_... | Banana | extracellular, plasma membrane | 35.3 | 26.75 |
| KRH72602 | Soybean | nucleus | 26.96 | 26.32 |
| KRH64275 | Soybean | nucleus | 27.3 | 26.04 |
| KRH53649 | Soybean | nucleus | 26.96 | 25.92 |
| KRH16970 | Soybean | nucleus | 26.26 | 25.59 |
| CDY66161 | Canola | nucleus | 28.17 | 25.51 |
| VIT_15s0048g02320.t01 | Wine grape | nucleus | 15.65 | 25.5 |
| Bra010193.1-P | Field mustard | nucleus | 28.17 | 25.47 |
| CDY26922 | Canola | nucleus | 28.17 | 25.47 |
| VIT_16s0098g00760.t01 | Wine grape | mitochondrion | 28.35 | 25.31 |
| AT1G33060.2 | Thale cress | nucleus | 28.52 | 25.15 |
| GSMUA_Achr5P18140_001 | Banana | nucleus | 16.17 | 24.87 |
| GSMUA_Achr11P... | Banana | nucleus | 17.74 | 23.29 |
| PGSC0003DMT400001498 | Potato | nucleus | 25.04 | 22.57 |
| Solyc06g073050.2.1 | Tomato | nucleus | 23.3 | 22.52 |
| GSMUA_Achr11P... | Banana | nucleus | 15.48 | 22.47 |
| GSMUA_Achr7P23330_001 | Banana | nucleus | 15.83 | 22.3 |
| VIT_15s0048g02300.t01 | Wine grape | nucleus | 16.87 | 22.1 |
| Solyc03g080090.2.1 | Tomato | nucleus | 24.0 | 21.94 |
| VIT_15s0048g02280.t01 | Wine grape | golgi, nucleus, plasma membrane | 19.3 | 21.72 |
| PGSC0003DMT400069511 | Potato | nucleus | 23.48 | 21.43 |
| VIT_15s0048g02270.t01 | Wine grape | nucleus | 23.3 | 21.34 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 19.48 | 20.14 |
| GSMUA_Achr8P13430_001 | Banana | nucleus | 20.52 | 19.44 |
| GSMUA_AchrUn_... | Banana | nucleus | 18.61 | 18.8 |
| GSMUA_Achr8P24280_001 | Banana | nucleus | 18.09 | 17.72 |
| GSMUA_Achr5P23620_001 | Banana | nucleus | 16.35 | 17.64 |
| GSMUA_AchrUn_... | Banana | nucleus | 14.43 | 17.36 |
| GSMUA_Achr9P23580_001 | Banana | plastid | 16.7 | 16.19 |
| CDX87118 | Canola | nucleus | 22.61 | 15.62 |
| GSMUA_Achr2P04010_001 | Banana | plastid | 16.7 | 14.98 |
| GSMUA_Achr9P20400_001 | Banana | nucleus, peroxisome, plastid | 15.48 | 14.83 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr4G29170_001 |
| EnsemblPlants:GSMUA_Achr4P29170_001 | EnsemblPlants:GSMUA_Achr4T29170_001 | InterPro:IPR003441 | InterPro:IPR036093 | UniProt:M0ST29 | InterPro:NAC-dom |
| InterPro:NAC_dom_sf | PFAM:PF02365 | PFscan:PS51005 | PANTHER:PTHR31989 | PANTHER:PTHR31989:SF102 | SUPFAM:SSF101941 |
| UniParc:UPI000294CFC6 | : | : | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G29170_001]
Coordinates
chr4:-:27255902..27259670
Molecular Weight (calculated)
64444.7 Da
IEP (calculated)
4.358
GRAVY (calculated)
-0.631
Length
575 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAVSVESLP LGFRFRPTDA ELVNHYLKGK ITGRIKSEIE VIPEIDVCKC EPWDVPDKSL IKSIDPEWFF FSPKDRKYPS GNRSNRATEA GYWKATGKDR
101: TIKSRSPGSM ILGMKKTLVF HRGRAPKGVR TNWIMHEYRT TEPEYESGEQ GGYVLCRLFR KPEEQTLVSE INDCMEKNVD EMESTGLSPS PTIVSPGETQ
201: HGSEAAEEVL TSLNQNLTGL DLQENLQPLP RIFEMPPSAI NELVADKMAF ANSCLLKPEE SYCNATIASD VADQGTDVAT EVDSLLDDFA QYLGQECDKL
301: GPDDYHISSP IVSPMGHSFY DGVNQGLLQE LNQFDNIEQD SVTEFLDAVL FNQEECSHEA SSACRGLIME FEAEDRNCLI MDDSHWDTLS GKDSRTGSDE
401: DTEVTTFEDG IGFYEEICRL PVGSSHLSQE NSYNVPTEQD TWQISVFPNQ KFSRNISSMD SSAGSLHQES TNTDNSDRAE IQIRVRKNLT DSDYLIKQQG
501: SAMRRLRLQK FIHNGSAPRT VHALSSNNDD SDKSGVTEAS EVLEHQFDEE KLVSGLTAED THGNKQQTML QLEIF
101: TIKSRSPGSM ILGMKKTLVF HRGRAPKGVR TNWIMHEYRT TEPEYESGEQ GGYVLCRLFR KPEEQTLVSE INDCMEKNVD EMESTGLSPS PTIVSPGETQ
201: HGSEAAEEVL TSLNQNLTGL DLQENLQPLP RIFEMPPSAI NELVADKMAF ANSCLLKPEE SYCNATIASD VADQGTDVAT EVDSLLDDFA QYLGQECDKL
301: GPDDYHISSP IVSPMGHSFY DGVNQGLLQE LNQFDNIEQD SVTEFLDAVL FNQEECSHEA SSACRGLIME FEAEDRNCLI MDDSHWDTLS GKDSRTGSDE
401: DTEVTTFEDG IGFYEEICRL PVGSSHLSQE NSYNVPTEQD TWQISVFPNQ KFSRNISSMD SSAGSLHQES TNTDNSDRAE IQIRVRKNLT DSDYLIKQQG
501: SAMRRLRLQK FIHNGSAPRT VHALSSNNDD SDKSGVTEAS EVLEHQFDEE KLVSGLTAED THGNKQQTML QLEIF
001: MNQIKNKTLP EMTTEQALLS MEALPLGFRF RPTDEELINH YLRLKINGRD LEVRVIPEID VCKWEPWDLP GLSVIKTDDQ EWFFFCPRDR KYPSGHRSNR
101: ATDIGYWKAT GKDRTIKSKK MIIGMKKTLV FYRGRAPRGE RTNWIMHEYR ATDKELDGTG PGQNPYVLCR LFHKPSDSCD PAHCEEIEKV NFTPTTTTRC
201: SPDDTSSEMV QETATSGVHA LDRSDDTERC LSDKGNNDVK PDVSVINNTS VNHAETSRAK DRNLGKTLVE ENPLLRDVPT LHGPILSEKS YYPGQSSIGF
301: ATSHMDSMYS SDFGNCDYGL HFQDGASEQD ASLTDVLDEV FHNHNESSND RKDFVLPNMM HWPGNTRLLS TEYPFLKDSV AFVDGSAEVS GSQQFVPDIL
401: ASRWVSEQNV DSKEAVEILS STGSSRTLTP LHNNVFGQYA SSSYAAIDPF NYNVNQPEQS SFEQSHVDRN ISPSNIFEFK ARSRENQRDL DSVVDQGTAP
501: RRIRLQIEQP LTPVTNKKER DADNYEEEDE VQSAMSKVVE EEPANLSAQG TAQRRIRLQT RLRKPLITLN NTKRNSNGRE GEASHRKEKE DISSSSSWQK
601: QKKSLVQFSS VVIIVAVIVV LVEIWKESRD AKCSFLFHQL DSFKGMFT
101: ATDIGYWKAT GKDRTIKSKK MIIGMKKTLV FYRGRAPRGE RTNWIMHEYR ATDKELDGTG PGQNPYVLCR LFHKPSDSCD PAHCEEIEKV NFTPTTTTRC
201: SPDDTSSEMV QETATSGVHA LDRSDDTERC LSDKGNNDVK PDVSVINNTS VNHAETSRAK DRNLGKTLVE ENPLLRDVPT LHGPILSEKS YYPGQSSIGF
301: ATSHMDSMYS SDFGNCDYGL HFQDGASEQD ASLTDVLDEV FHNHNESSND RKDFVLPNMM HWPGNTRLLS TEYPFLKDSV AFVDGSAEVS GSQQFVPDIL
401: ASRWVSEQNV DSKEAVEILS STGSSRTLTP LHNNVFGQYA SSSYAAIDPF NYNVNQPEQS SFEQSHVDRN ISPSNIFEFK ARSRENQRDL DSVVDQGTAP
501: RRIRLQIEQP LTPVTNKKER DADNYEEEDE VQSAMSKVVE EEPANLSAQG TAQRRIRLQT RLRKPLITLN NTKRNSNGRE GEASHRKEKE DISSSSSWQK
601: QKKSLVQFSS VVIIVAVIVV LVEIWKESRD AKCSFLFHQL DSFKGMFT
Arabidopsis Description
NAC014NAC014 [Source:UniProtKB/TrEMBL;Acc:A0A178WRQ2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.