CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH41529
KRH60241

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49530.1	KRH41529	AT5G19570.1	21798944
AT3G49530.1	KRH60241	AT5G19570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16970	Soybean	nucleus	89.3	89.15
KRH64275	Soybean	nucleus	58.57	57.21
KRH53649	Soybean	nucleus	57.39	56.52
KRH34662	Soybean	cytosol	8.49	54.95
GSMUA_Achr11P...	Banana	cytosol	15.45	48.15
GSMUA_Achr2P11810_001	Banana	cytosol, mitochondrion, nucleus, plastid	19.19	38.97
KRH38928	Soybean	nucleus	16.98	37.74
Bra019599.1-P	Field mustard	nucleus	27.5	37.5
KRH09473	Soybean	nucleus	16.81	37.5
CDY00208	Canola	nucleus	27.5	37.5
AT5G24590.2	Thale cress	nucleus	28.35	37.03
Bra036520.1-P	Field mustard	nucleus	27.67	36.63
CDY19828	Canola	nucleus	27.67	36.63
CDX88115	Canola	cytosol	26.66	35.44
Bra017980.1-P	Field mustard	nucleus	27.5	34.99
AT3G49530.1	Thale cress	nucleus	27.84	34.97
CDX80455	Canola	nucleus	26.83	34.65
VIT_16s0098g00760.t01	Wine grape	mitochondrion	37.86	34.63
CDY05939	Canola	nucleus	27.16	34.56
Bra009774.1-P	Field mustard	nucleus	26.66	34.51
CDY08139	Canola	nucleus	27.16	34.48
PGSC0003DMT400001498	Potato	nucleus	34.97	32.29
Solyc03g080090.2.1	Tomato	nucleus	34.47	32.27
Solyc06g073050.2.1	Tomato	nucleus	32.09	31.76
PGSC0003DMT400069511	Potato	nucleus	33.45	31.27
KRH13792	Soybean	nucleus	18.0	30.55
KRH43662	Soybean	nucleus	17.83	30.17
KRH04320	Soybean	nucleus	17.15	29.53
KRH22653	Soybean	nucleus	18.51	29.38
KRH58218	Soybean	nucleus	16.98	28.99
GSMUA_Achr4P29170_001	Banana	nucleus	26.32	26.96
KRH43549	Soybean	cytosol	14.77	26.93
GSMUA_Achr1P03560_001	Banana	nucleus	25.98	26.66
OQU79937	Sorghum	nucleus	29.88	26.51
Zm00001d049540_P002	Maize	cytosol	29.71	26.48
Zm00001d024543_P001	Maize	nucleus	28.01	24.85
KRG92124	Soybean	nucleus	18.68	23.66
KRH34660	Soybean	plastid	18.51	23.44
KRH59567	Soybean	cytosol, golgi, nucleus	12.56	23.34
Os08t0157900-01	Rice	nucleus, plasma membrane	28.86	23.32
TraesCS7D01G295100.1	Wheat	nucleus	27.33	23.17
TraesCS7B01G187600.1	Wheat	nucleus	27.5	23.11
HORVU7Hr1G070780.5	Barley	nucleus	27.5	23.01
TraesCS7A01G299600.3	Wheat	nucleus	27.33	22.97
KRH72917	Soybean	cytosol, nucleus, plasma membrane	24.28	22.24
KRH26664	Soybean	nucleus	18.34	21.91
KRH17271	Soybean	cytosol, nucleus, plasma membrane	23.94	21.89
KRG91745	Soybean	nucleus	20.37	21.86
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane	27.67	21.48
KRH35027	Soybean	nucleus	20.2	21.25
KRH64046	Soybean	nucleus	16.81	20.5
KRG98003	Soybean	cytosol, nucleus, plasma membrane	23.09	20.06
KRH30885	Soybean	cytosol, nucleus, vacuole	22.58	19.79
CDX87118	Canola	nucleus	27.84	19.71
KRH53893	Soybean	nucleus	16.3	19.09
KRG92121	Soybean	cytosol	17.66	17.22

Protein Annotations

EntrezGene:100170715	MapMan:15.5.17	Gene3D:3.30.310.150	EMBL:ACUP02001223	EnsemblPlantsGene:GLYMA_02G222300	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	UniProt:I1JH85	InterPro:IPR003441
InterPro:IPR036093	EMBL:JX569045	EnsemblPlants:KRH72602	ProteinID:KRH72602	ProteinID:KRH72602.1	InterPro:NAC-dom
InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR31989	PANTHER:PTHR31989:SF54	SUPFAM:SSF101941
TMHMM:TMhelix	UniParc:UPI00023BD53C	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:40991314..40995436

Molecular Weight (calculated)

65604.9 Da

IEP (calculated)

4.654

GRAVY (calculated)

-0.596

Length

589 amino acids

Sequence
(BLAST)

001: MGAVVECYPQ PRTAVLSLNT LPLGFRFRPT DEELIDYYLR SKINGNGDDV WVIREIDVCK WEPWDLPDLS VVRNKDPEWF FFCPQDRKYP NGHRLNRATS
101: HGYWKATGKD RRIKSGSTLI GMKKTLVFYT GRAPKGKRTN WVMHEYRPTL KELDGTNPGQ NPYVLCRLFK KQDESLEASN GDDVDRTAST PMTANYSPDE
201: IQSDSALVPA SSSQVTEDDK PLPVISENSE EAISNIITPG EIHSDGCNAP DAQDQIVEPV AEEDQPLNVD IFYDPTNLPL DDKLFSPVHA HFPTDFYYQA
301: NNQSELQYGT NENISEFFDS VVNWDAFSHD TSSLDLSSSF LINNTDNGSG SDSDVEMTNM PHLQALHNYP KEAVEQKSNV GLFQNNFQMA LSNDSTMGQV
401: HNMVNYCEQP RNFDAFVSAD TGIRIRTRPG RNEQPNMDTM VQSQGIAPRR IRLGVVRRPL GSQDGSCACA PEDHNSKTII TAEKKASESE NHAADGSSTV
501: SDMSSTVTDD VDEPEEASPE STDLRNISEK HVATAESVAG SKVLLVNRRV HYTSKVSSNR ATWSNVLAVS AAVLVSAILL VNIWAYVRS

Best Arabidopsis Sequence Match ( AT4G35580.1 )
(BLAST)

001: MGAVSMESLP LGFRFRPTDE ELVNHYLRLK INGRHSDVRV IPDIDVCKWE PWDLPALSVI KTDDPEWFFF CPRDRKYPNG HRSNRATDSG YWKATGKDRS
101: IKSKKTLIGM KKTLVFYRGR APKGERTNWI MHEYRPTLKD LDGTSPGQSP YVLCRLFHKP DDRVNGVKSD EAAFTASNKY SPDDTSSDLV QETPSSDAAV
201: EKPSDYSGGC GYAHSNSTAD GTMIEAPEEN LWLSCDLEDQ KAPLPCMDSI YAGDFSYDEI GFQFQDGTSE PDVSLTELLE EVFNNPDDFS CEESISRENP
301: AVSPNGIFSS AKMLQSAAPE DAFFNDFMAF TDTDAEMAQL QYGSEGGASG WPSDTNSYYS DLVQQEQMIN HNTENNLTEG RGIKIRARQP QNRQSTGLIN
401: QGIAPRRIRL QLQSNSEVKE REEVNEGHTV IPEAKEAAAK YSEKSGSLVK PQIKLRARGT IGQVKGERFA DDEVQVQSRK RRGGKRWKVV ATVMVAVMVG
501: VGMGIWRTLV SS

Arabidopsis Description

NTL9NAC transcription factor-like 9 [Source:TAIR;Acc:AT4G35580]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.