Factsheet for TraesCS7A01G299600.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G075900.1
TraesCS1B01G094400.1
TraesCS1D01G078300.1
TraesCS2A01G009000.1
TraesCS2B01G101500.1
TraesCS2D01G009800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49530.1	TraesCS1A01G075900.1	AT5G19570.1	21798944
AT3G49530.1	TraesCS1B01G094400.1	AT5G19570.1	21798944
AT3G49530.1	TraesCS1D01G078300.1	AT5G19570.1	21798944
AT3G49530.1	TraesCS2A01G009000.1	AT5G19570.1	21798944
AT3G49530.1	TraesCS2B01G101500.1	AT5G19570.1	21798944
AT3G49530.1	TraesCS2D01G009800.1	AT5G19570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G187600.1	Wheat	nucleus	97.15	97.15
TraesCS7D01G295100.1	Wheat	nucleus	95.72	96.55
HORVU7Hr1G070780.5	Barley	nucleus	91.73	91.34
GSMUA_Achr11P...	Banana	cytosol	17.69	65.61
Os08t0157900-01	Rice	nucleus, plasma membrane	63.05	60.63
Zm00001d049540_P002	Maize	cytosol	55.21	58.55
OQU79937	Sorghum	nucleus	55.21	58.28
Zm00001d024543_P001	Maize	nucleus	49.93	52.71
VIT_15s0048g02310.t01	Wine grape	cytosol	11.84	50.3
TraesCS5A01G353500.1	Wheat	nucleus	13.55	43.78
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane	38.52	35.57
TraesCS5A01G220900.1	Wheat	cytosol	11.27	33.91
Bra019599.1-P	Field mustard	nucleus	20.26	32.87
CDY00208	Canola	nucleus	20.26	32.87
AT5G24590.2	Thale cress	nucleus	20.54	31.93
Bra017980.1-P	Field mustard	nucleus	20.83	31.53
Bra036520.1-P	Field mustard	nucleus	19.97	31.46
CDY19828	Canola	nucleus	19.97	31.46
CDY08139	Canola	nucleus	20.68	31.25
CDY05939	Canola	nucleus	20.26	30.67
VIT_15s0048g02290.t01	Wine grape	nucleus	13.98	30.53
CDX88115	Canola	cytosol	19.12	30.25
Bra009774.1-P	Field mustard	nucleus	19.26	29.67
TraesCS1A01G190100.1	Wheat	nucleus	13.98	29.25
AT3G49530.1	Thale cress	nucleus	19.54	29.21
CDX80455	Canola	nucleus	18.97	29.17
AT4G35580.2	Thale cress	nucleus	21.4	28.09
VIT_02s0025g03020.t01	Wine grape	nucleus	25.25	28.01
VIT_15s0048g02320.t01	Wine grape	nucleus	13.84	27.48
KRH72602	Soybean	nucleus	22.97	27.33
KRH16970	Soybean	nucleus	22.54	26.78
VIT_16s0098g00760.t01	Wine grape	mitochondrion	24.39	26.55
KRH53649	Soybean	nucleus	22.11	25.92
KRH64275	Soybean	nucleus	21.97	25.54
AT1G33060.2	Thale cress	nucleus	23.25	25.0
Solyc06g073050.2.1	Tomato	nucleus	21.11	24.87
TraesCS2A01G561800.1	Wheat	cytosol, mitochondrion, nucleus, plastid	12.55	24.79
PGSC0003DMT400069511	Potato	nucleus	21.83	24.29
PGSC0003DMT400001498	Potato	nucleus	21.83	23.98
VIT_15s0048g02300.t01	Wine grape	nucleus	14.98	23.92
CDY66161	Canola	nucleus	21.4	23.62
CDY26922	Canola	nucleus	21.4	23.58
Bra010193.1-P	Field mustard	nucleus	21.4	23.58
TraesCS6A01G003800.1	Wheat	nucleus	12.55	23.34
Solyc03g080090.2.1	Tomato	nucleus	20.4	22.73
TraesCS3A01G176500.1	Wheat	cytosol	16.12	22.6
TraesCS1A01G266300.2	Wheat	nucleus	13.69	22.38
VIT_15s0048g02270.t01	Wine grape	nucleus	19.4	21.66
VIT_15s0048g02280.t01	Wine grape	golgi, nucleus, plasma membrane	15.55	21.33
TraesCS2A01G561700.1	Wheat	nucleus	12.7	20.99
TraesCS5A01G519300.1	Wheat	cytosol, nucleus, peroxisome	18.83	19.02
CDX87118	Canola	nucleus	19.97	16.83
TraesCS6A01G406700.1	Wheat	cytosol, golgi, nucleus	15.12	16.46
TraesCS5A01G271500.2	Wheat	nucleus	15.55	14.93

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003441	InterPro:IPR036093	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005
PANTHER:PTHR31989	PANTHER:PTHR31989:SF102	SUPFAM:SSF101941	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS7A01G299600	EnsemblPlants:TraesCS7A01G299600.3
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7A:+:410727006..410730540

Molecular Weight (calculated)

77650.0 Da

IEP (calculated)

4.529

GRAVY (calculated)

-0.688

Length

701 amino acids

Sequence
(BLAST)

001: MTVMELKALP LGFRFHPTDE ELVRHYLKGK ITGQIKNEVE VIPEIDVCKC EPWDLPDKAL IRSEDPEWFF FAPKDRKYPN GSRSNRATEA GYWKATGKDR
101: VIKSKGEKKK QHMIGMKKTL VFHRGRAPKG ERTGWIMHEY RTTEPEFESG EQGGYVLYRL FQKQLEKTER SIPEEMDRSG YSPTPSRSTP DNMEANEEAI
201: TLINKESPES GLHGCPIELP GTIDTPGTPV TRWLADRNGN SGIDEANVLG MPFHGNVDES PKQADMSVGS LAHLIDSQTE NLGSHEFATV SAPMLSHEDL
301: DKLLLQLPHN SVEDFLNETI ADPDEHSSTA YKVQYDADTC FMQAQGELLY DGPNWFGNFL SDDTNPQQSG LYENAALLPY GTNPDVLSMD SGDESLQDLF
401: NSMDDSSGQN DVWSNGFGFN PMHQQLQSTV HPNYIFSQQG IAPRRLRLLD SLSDVNVESR ECMTRDEHEG EESDIVTSKC TSESVESSAD VDDSESTGVT
501: IMTRRRALTR SVPSDCDDAQ STGITIMARR PAPSSNMPSD EADAEATGID IMSRHTAPSS STDSSFNTEQ GTAVRRLRLQ SNLDAGSCSS VDGSSSCIIE
601: HGSENEGLEA EIEEHVDTNF PDDAGNSHAD EQMYMPDHEA NSGMRLRKTA EKSDKESKQE CGLQSHVRAP RKRGGFAARM ILPVLSVALL VLVSVGIYGW
701: A

Best Arabidopsis Sequence Match ( AT1G33060.1 )
(BLAST)

001: MNQIKNKTLP EMTTEQALLS MEALPLGFRF RPTDEELINH YLRLKINGRD LEVRVIPEID VCKWEPWDLP GLSVIKTDDQ EWFFFCPRDR KYPSGHRSNR
101: ATDIGYWKAT GKDRTIKSKK MIIGMKKTLV FYRGRAPRGE RTNWIMHEYR ATDKELDGTG PGQNPYVLCR LFHKPSDSCD PAHCEEIEKV NFTPTTTTRC
201: SPDDTSSEMV QETATSGVHA LDRSDDTERC LSDKGNNDVK PDVSVINNTS VNHAETSRAK DRNLGKTLVE ENPLLRDVPT LHGPILSEKS YYPGQSSIGF
301: ATSHMDSMYS SDFGNCDYGL HFQDGASEQD ASLTDVLDEV FHNHNESSND RKDFVLPNMM HWPGNTRLLS TEYPFLKDSV AFVDGSAEVS GSQQFVPDIL
401: ASRWVSEQNV DSKEAVEILS STGSSRTLTP LHNNVFGQYA SSSYAAIDPF NYNVNQPEQS SFEQSHVDRN ISPSNIFEFK ARSRENQRDL DSVVDQGTAP
501: RRIRLQIEQP LTPVTNKKER DADNYEEEDE VQSAMSKVVE EEPANLSAQG TAQRRIRLQT RLRKPLITLN NTKRNSNGRE GEASHRKEKE DISSSSSWQK
601: QKKSLVQFSS VVIIVAVIVV LVEIWKESRD AKCSFLFHQL DSFKGMFT

Arabidopsis Description

NAC014NAC014 [Source:UniProtKB/TrEMBL;Acc:A0A178WRQ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.