Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G49530.1 | CDY42278 | AT5G19570.1 | 21798944 |
| AT3G49530.1 | CDY44927 | AT5G19570.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017980.1-P | Field mustard | nucleus | 98.06 | 98.27 |
| CDY05939 | Canola | nucleus | 90.09 | 90.28 |
| CDX86969 | Canola | cytosol | 17.24 | 74.77 |
| CDY00208 | Canola | nucleus | 67.89 | 72.92 |
| CDX86970 | Canola | nucleus | 49.35 | 72.47 |
| AT3G49530.1 | Thale cress | nucleus | 69.61 | 68.87 |
| CDX88115 | Canola | cytosol | 52.16 | 54.63 |
| CDY19828 | Canola | nucleus | 51.51 | 53.71 |
| CDX80455 | Canola | nucleus | 51.94 | 52.85 |
| CDY70627 | Canola | cytosol | 17.67 | 49.7 |
| CDY41351 | Canola | plastid | 17.46 | 48.5 |
| GSMUA_Achr11P... | Banana | cytosol | 19.61 | 48.15 |
| CDY71253 | Canola | cytosol | 17.24 | 44.94 |
| GSMUA_Achr2P11810_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 23.71 | 37.93 |
| CDX92153 | Canola | nucleus | 17.89 | 36.73 |
| CDX95832 | Canola | nucleus | 17.89 | 36.73 |
| CDX90431 | Canola | nucleus | 20.04 | 32.52 |
| CDY10502 | Canola | nucleus | 21.12 | 31.92 |
| CDY01508 | Canola | nucleus | 19.61 | 31.82 |
| CDY42413 | Canola | nucleus | 20.69 | 31.07 |
| CDX67739 | Canola | nucleus | 20.69 | 30.87 |
| CDX77674 | Canola | nucleus | 18.75 | 30.63 |
| CDX78816 | Canola | nucleus | 19.18 | 30.48 |
| CDY63046 | Canola | nucleus | 18.97 | 30.34 |
| CDY44498 | Canola | nucleus | 18.97 | 30.14 |
| CDY66060 | Canola | nucleus | 18.32 | 29.72 |
| CDY67205 | Canola | nucleus | 18.32 | 29.72 |
| CDX84070 | Canola | nucleus | 18.1 | 29.68 |
| CDY59580 | Canola | nucleus | 18.75 | 29.59 |
| CDX87703 | Canola | nucleus | 18.53 | 29.25 |
| CDX87118 | Canola | nucleus | 52.37 | 29.21 |
| CDX71459 | Canola | cytosol, golgi, nucleus | 21.55 | 28.99 |
| CDY04487 | Canola | cytosol | 21.34 | 28.7 |
| CDY46459 | Canola | nucleus | 18.75 | 28.62 |
| KRH53649 | Soybean | nucleus | 36.42 | 28.26 |
| KRH64275 | Soybean | nucleus | 36.42 | 28.03 |
| CDY43785 | Canola | nucleus | 20.69 | 27.91 |
| CDX84485 | Canola | nucleus | 20.69 | 27.75 |
| CDY20351 | Canola | cytosol, golgi, nucleus | 20.04 | 27.43 |
| CDY44793 | Canola | nucleus | 20.69 | 27.43 |
| KRH16970 | Soybean | nucleus | 34.7 | 27.29 |
| CDY34714 | Canola | cytosol, golgi, nucleus | 19.83 | 27.22 |
| KRH72602 | Soybean | nucleus | 34.48 | 27.16 |
| CDX70995 | Canola | cytosol | 19.18 | 26.65 |
| Solyc06g073050.2.1 | Tomato | nucleus | 33.84 | 26.39 |
| CDX88803 | Canola | cytosol | 18.75 | 25.82 |
| VIT_16s0098g00760.t01 | Wine grape | mitochondrion | 35.78 | 25.78 |
| CDX92368 | Canola | cytosol | 18.32 | 25.37 |
| CDY35676 | Canola | cytoskeleton, cytosol, nucleus | 18.75 | 25.36 |
| PGSC0003DMT400069511 | Potato | nucleus | 34.05 | 25.08 |
| CDY09128 | Canola | cytosol | 18.53 | 25.07 |
| CDX81124 | Canola | nucleus | 18.32 | 24.85 |
| PGSC0003DMT400001498 | Potato | nucleus | 33.84 | 24.61 |
| CDY66161 | Canola | nucleus | 33.41 | 24.41 |
| CDY26922 | Canola | nucleus | 33.19 | 24.21 |
| Solyc03g080090.2.1 | Tomato | nucleus | 32.54 | 24.01 |
| GSMUA_Achr1P03560_001 | Banana | nucleus | 29.53 | 23.87 |
| CDY34716 | Canola | nucleus | 15.09 | 23.81 |
| GSMUA_Achr4P29170_001 | Banana | nucleus | 29.31 | 23.65 |
| CDY41352 | Canola | nucleus | 20.26 | 22.33 |
| CDY00676 | Canola | nucleus | 20.47 | 22.2 |
| Zm00001d049540_P002 | Maize | cytosol | 30.17 | 21.18 |
| CDX73920 | Canola | nucleus | 20.26 | 21.03 |
| OQU79937 | Sorghum | nucleus | 29.96 | 20.93 |
| CDY41353 | Canola | nucleus | 19.83 | 20.86 |
| Zm00001d024543_P001 | Maize | nucleus | 29.74 | 20.78 |
| CDX69911 | Canola | nucleus | 19.61 | 20.78 |
| TraesCS7A01G299600.3 | Wheat | nucleus | 31.25 | 20.68 |
| TraesCS7B01G187600.1 | Wheat | nucleus | 31.25 | 20.68 |
| CDY00677 | Canola | nucleus | 19.83 | 20.67 |
| CDX78356 | Canola | nucleus | 16.16 | 20.66 |
| CDY00946 | Canola | nucleus | 20.04 | 20.62 |
| HORVU7Hr1G070780.5 | Barley | nucleus | 31.25 | 20.6 |
| CDY08601 | Canola | nucleus, plastid | 20.04 | 20.44 |
| TraesCS7D01G295100.1 | Wheat | nucleus | 30.39 | 20.29 |
| CDY21575 | Canola | nucleus | 18.97 | 20.28 |
| CDX73921 | Canola | cytosol, nucleus, plastid | 19.83 | 20.18 |
| CDY16943 | Canola | nucleus | 21.55 | 20.12 |
| CDY61762 | Canola | cytosol, nucleus, plastid | 22.41 | 20.04 |
| Os08t0157900-01 | Rice | nucleus, plasma membrane | 31.47 | 20.03 |
| CDX78734 | Canola | cytosol | 20.91 | 19.8 |
| CDX70745 | Canola | cytosol | 20.91 | 19.64 |
| CDY28745 | Canola | cytosol | 20.04 | 19.46 |
| CDY43143 | Canola | nucleus | 20.04 | 19.46 |
| CDY49932 | Canola | nucleus | 20.04 | 19.42 |
| CDY14157 | Canola | cytosol, nucleus, vacuole | 21.55 | 19.38 |
| CDY44853 | Canola | cytosol, nucleus, vacuole | 22.63 | 18.75 |
| CDY41354 | Canola | cytosol, nucleus, plastid | 21.55 | 18.62 |
| CDX70227 | Canola | cytosol, nucleus, vacuole | 22.2 | 18.59 |
| CDY25752 | Canola | nucleus | 20.04 | 18.27 |
| CDX91785 | Canola | nucleus | 21.12 | 18.18 |
| GSMUA_AchrUn_... | Banana | extracellular, plasma membrane | 29.74 | 18.18 |
| CDY58437 | Canola | cytosol, nucleus, plastid | 21.55 | 17.99 |
| CDY60870 | Canola | nucleus | 22.2 | 17.85 |
| CDY11289 | Canola | cytosol, nucleus, vacuole | 21.77 | 17.84 |
| CDX73305 | Canola | nucleus | 19.61 | 17.47 |
| CDY16427 | Canola | nucleus | 22.2 | 17.31 |
| CDX93723 | Canola | nucleus | 20.69 | 17.27 |
| CDY70628 | Canola | golgi | 14.66 | 17.17 |
| CDY48632 | Canola | cytosol, nucleus, plastid | 20.69 | 17.05 |
| CDY28401 | Canola | cytosol, nucleus, plastid | 20.04 | 17.03 |
| CDY12515 | Canola | plastid | 19.61 | 16.7 |
| CDY28397 | Canola | nucleus | 20.69 | 16.61 |
| CDX73304 | Canola | nucleus | 20.47 | 16.3 |
| CDY21216 | Canola | nucleus | 13.79 | 14.88 |
| CDX69392 | Canola | nucleus | 8.84 | 9.58 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:A0A078F525 | UniProt:A0A078F525 | EnsemblPlants:CDY08139 | ProteinID:CDY08139 |
| ProteinID:CDY08139.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00125430001 | InterPro:IPR003441 |
| InterPro:IPR036093 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 | PFscan:PS51005 | PANTHER:PTHR31989 |
| PANTHER:PTHR31989:SF54 | SUPFAM:SSF101941 | UniParc:UPI0004EE205E | : | : | : |
Description
BnaA06g15870DBnaA06g15870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F525]
Coordinates
chrLK031983:-:646567..648800
Molecular Weight (calculated)
51373.4 Da
IEP (calculated)
6.080
GRAVY (calculated)
-0.430
Length
464 amino acids
Sequence
(BLAST)
(BLAST)
001: MASTNQNIKV LTLDSLPVGL RFRPTDEELV RFYLHRKING HDDDVTAIRE IDICKWEPWD LPGFSVIKTN DSEWLFFCPL DRKYPNGSRQ NRATIAGYWK
101: ATGKDRKIKS GKNSIIGVKR TLVFHSGRAP KGTRTNWIMH EYRATEDDLS GTNPGQSPFV ICKLFKKQDL SLADEDSKLD EAAEQDVLSP TAATSSPGET
201: RSQVSVVVKT EDVKRYDISE SSLLVSSACV EATTAQLGDI DYLAFPELES LNYTMFSPSH SQLQSELGFS LNAFQSGLSD FSGNHSNSSQ VQTQYGTNEV
301: DTYISDFVDS ILDLPDDDAV PEQEGSAPHQ IAYAQHSVGD MSNDVSRTGI IKLQARREQP SGCATDYIVH GSASKRLRLQ SNLEGIKSRS LELQTIKREV
401: EEDRDGEAMK KGKPSKNKTG LLFRKFVSVR CSSGGLLRAA VVAILFLMSV CSLTADFRAA SVMI
101: ATGKDRKIKS GKNSIIGVKR TLVFHSGRAP KGTRTNWIMH EYRATEDDLS GTNPGQSPFV ICKLFKKQDL SLADEDSKLD EAAEQDVLSP TAATSSPGET
201: RSQVSVVVKT EDVKRYDISE SSLLVSSACV EATTAQLGDI DYLAFPELES LNYTMFSPSH SQLQSELGFS LNAFQSGLSD FSGNHSNSSQ VQTQYGTNEV
301: DTYISDFVDS ILDLPDDDAV PEQEGSAPHQ IAYAQHSVGD MSNDVSRTGI IKLQARREQP SGCATDYIVH GSASKRLRLQ SNLEGIKSRS LELQTIKREV
401: EEDRDGEAMK KGKPSKNKTG LLFRKFVSVR CSSGGLLRAA VVAILFLMSV CSLTADFRAA SVMI
001: MNQNLHVLSM DSLPVGLRFR PTDEELIRYY LRRKINGHDD DVKAIREIDI CKWEPWDLPD FSVIKTKDSE WLYFCPLDRK YPSGSRQNRA TVAGYWKATG
101: KDRKIKSGKT NIIGVKRTLV FHAGRAPRGT RTNWIIHEYR ATEDDLSGTN PGQSPFVICK LFKKEELVLG EEDSKSDEVE EPAVSSPTVE VTKSEVSEVI
201: KTEDVKRHDI AESSLVISGD SHSDACDEAT TAELVDFKWY PELESLDFTL FSPLHSQVQS ELGSSYNTFQ PGSSNFSGNN NNSFQIQTQY GTNEVDTYIS
301: DFLDSILKSP DEDPEKHKYV LQSGFDVVAP DQIAQVCQQG SAVDMSNDVS VTGIQIKSRQ AQPSGYTNDY IAQGNGPRRL RLQSNFNGIN TKNPELQAIK
401: REAEDTVGES IKKRCGKLMR SKNVTGFVFK KITSVKCSYG GLFRAAVVAV VFLMSVCSLT VDFRASAVS
101: KDRKIKSGKT NIIGVKRTLV FHAGRAPRGT RTNWIIHEYR ATEDDLSGTN PGQSPFVICK LFKKEELVLG EEDSKSDEVE EPAVSSPTVE VTKSEVSEVI
201: KTEDVKRHDI AESSLVISGD SHSDACDEAT TAELVDFKWY PELESLDFTL FSPLHSQVQS ELGSSYNTFQ PGSSNFSGNN NNSFQIQTQY GTNEVDTYIS
301: DFLDSILKSP DEDPEKHKYV LQSGFDVVAP DQIAQVCQQG SAVDMSNDVS VTGIQIKSRQ AQPSGYTNDY IAQGNGPRRL RLQSNFNGIN TKNPELQAIK
401: REAEDTVGES IKKRCGKLMR SKNVTGFVFK KITSVKCSYG GLFRAAVVAV VFLMSVCSLT VDFRASAVS
Arabidopsis Description
NAC062NAC domain-containing protein 62 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCK6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.