Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G19570.1 | CDX70995 | AT5G22290.1 | 21798944 |
| AT5G19570.1 | CDX88803 | AT5G22290.1 | 21798944 |
| AT5G19570.1 | CDX92368 | AT5G22290.1 | 21798944 |
| AT5G19570.1 | CDY09128 | AT5G22290.1 | 21798944 |
| AT5G19570.1 | CDY35676 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra020049.1-P | Field mustard | golgi, plasma membrane, vacuole | 98.6 | 98.6 |
| CDY42278 | Canola | extracellular, plasma membrane, vacuole | 90.91 | 94.2 |
| AT5G19570.1 | Thale cress | cytosol, peroxisome, plasma membrane | 76.22 | 79.56 |
| VIT_11s0016g03470.t01 | Wine grape | extracellular | 61.54 | 64.71 |
| PGSC0003DMT400061606 | Potato | extracellular, nucleus, plasma membrane | 56.64 | 61.36 |
| Solyc11g006870.1.1 | Tomato | plasma membrane | 54.55 | 59.09 |
| GSMUA_Achr2P09220_001 | Banana | cytosol | 51.75 | 58.27 |
| TraesCS1B01G094400.1 | Wheat | cytosol | 51.75 | 57.81 |
| TraesCS1D01G078300.1 | Wheat | cytosol | 50.35 | 56.25 |
| TraesCS2D01G009800.1 | Wheat | cytosol | 50.35 | 56.25 |
| TraesCS2A01G009000.1 | Wheat | cytosol | 49.65 | 55.47 |
| TraesCS2B01G101500.1 | Wheat | cytosol | 49.65 | 55.47 |
| Zm00001d004482_P001 | Maize | cytosol, extracellular, mitochondrion, vacuole | 47.55 | 53.54 |
| Os05t0188300-01 | Rice | cytosol, extracellular, vacuole | 48.25 | 52.67 |
| TraesCS1A01G075900.1 | Wheat | mitochondrion | 50.35 | 52.17 |
| EES11767 | Sorghum | plastid | 46.85 | 51.94 |
| KRH41529 | Soybean | endoplasmic reticulum, golgi, mitochondrion | 49.65 | 51.08 |
| KRH60241 | Soybean | cytosol, extracellular, plasma membrane | 49.65 | 35.68 |
Protein Annotations
| EnsemblPlants:CDY44927 | EnsemblPlantsGene:GSBRNA2T00081084001 | GO:A0A078I4F8 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:TMEM234 | PANTHER:PTHR28668 | PFAM:PF10639 | ProteinID:CDY44927 | ProteinID:CDY44927.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI0004EE944D | UniProt:A0A078I4F8 | MapMan:35.2 | : | : |
Description
BnaA02g04320DBnaA02g04320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I4F8]
Coordinates
chrLK032606:+:88238..88669
Molecular Weight (calculated)
15358.8 Da
IEP (calculated)
9.309
GRAVY (calculated)
0.601
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: MKEDIQKMVA VGLVWGATNA LIRRGALAWD KKSSSSSSTI TESPPLQIPS TFRRKLLASL RDWINLLLFW QYSVPFLVNL SASAAFFALL GDSPISIAVP
101: VTNATTFAAT AAFGVLLGEE TQIGLALVGT SFIVFGIWLC VGH
101: VTNATTFAAT AAFGVLLGEE TQIGLALVGT SFIVFGIWLC VGH
001: MKEDMDKMVA VGLVWGATNA LIRRGALAWD KTKSSSTTES HSPPLQIRRK IMIALRDWIN LLLFWQYSIP FLINLSASAT FFALLSHAPI SLAVPVTNAT
101: TFAATAAFGI LLGEETQIGL ALLGTSFIVF GIWLCVL
101: TFAATAAFGI LLGEETQIGL ALLGTSFIVF GIWLCVL
Arabidopsis Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q94AU5]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.