Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G19570.1 | KRH22653 | AT5G22290.1 | 21798944 |
| AT5G19570.1 | KRH26664 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH41529 | Soybean | endoplasmic reticulum, golgi, mitochondrion | 58.29 | 83.45 |
| VIT_11s0016g03470.t01 | Wine grape | extracellular | 40.2 | 58.82 |
| PGSC0003DMT400061606 | Potato | extracellular, nucleus, plasma membrane | 38.69 | 58.33 |
| Solyc11g006870.1.1 | Tomato | plasma membrane | 38.69 | 58.33 |
| AT5G19570.1 | Thale cress | cytosol, peroxisome, plasma membrane | 38.19 | 55.47 |
| TraesCS2D01G009800.1 | Wheat | cytosol | 35.68 | 55.47 |
| TraesCS2B01G101500.1 | Wheat | cytosol | 35.68 | 55.47 |
| TraesCS2A01G009000.1 | Wheat | cytosol | 35.18 | 54.69 |
| TraesCS1B01G094400.1 | Wheat | cytosol | 35.18 | 54.69 |
| TraesCS1D01G078300.1 | Wheat | cytosol | 34.67 | 53.91 |
| GSMUA_Achr2P09220_001 | Banana | cytosol | 34.17 | 53.54 |
| Zm00001d004482_P001 | Maize | cytosol, extracellular, mitochondrion, vacuole | 33.17 | 51.97 |
| Os05t0188300-01 | Rice | cytosol, extracellular, vacuole | 33.67 | 51.15 |
| EES11767 | Sorghum | plastid | 32.66 | 50.39 |
| TraesCS1A01G075900.1 | Wheat | mitochondrion | 34.67 | 50.0 |
| CDY44927 | Canola | golgi, plasma membrane, vacuole | 35.68 | 49.65 |
| CDY42278 | Canola | extracellular, plasma membrane, vacuole | 34.17 | 49.28 |
| Bra020049.1-P | Field mustard | golgi, plasma membrane, vacuole | 34.67 | 48.25 |
Protein Annotations
| EMBL:ACUP02003356 | EnsemblPlants:KRH60241 | EnsemblPlantsGene:GLYMA_05G228800 | EntrezGene:102665209 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:TMEM234 | PANTHER:PTHR28668 | PFAM:PF10639 | ProteinID:KRH60240.1 | ProteinID:KRH60241 |
| ProteinID:KRH60241.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000296D0F7 | UniProt:K7KRP8 | MapMan:35.2 |
Description
hypothetical protein
Coordinates
chr5:+:40667760..40669731
Molecular Weight (calculated)
21251.2 Da
IEP (calculated)
7.776
GRAVY (calculated)
0.558
Length
199 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKMIAVGIV WGATNAIMRR GALLWDEALK SSAKPHPHST LCQKMRISVG NWAKLLSIWQ YSIPFLINLS ASATFFAILS DAPLSLAVPV TNATTFAATA
101: VFGILLGERT HLPRAFFVVI DHVVVPDPIQ LPHLGVTQLL VSPGSPPICW EIGGTLIDAL CSAPLASPCS EMVESGREWC AVPVRLNKAA SGCPVVCIP
101: VFGILLGERT HLPRAFFVVI DHVVVPDPIQ LPHLGVTQLL VSPGSPPICW EIGGTLIDAL CSAPLASPCS EMVESGREWC AVPVRLNKAA SGCPVVCIP
001: MKEDMDKMVA VGLVWGATNA LIRRGALAWD KTKSSSTTES HSPPLQIRRK IMIALRDWIN LLLFWQYSIP FLINLSASAT FFALLSHAPI SLAVPVTNAT
101: TFAATAAFGI LLGEETQIGL ALLGTSFIVF GIWLCVL
101: TFAATAAFGI LLGEETQIGL ALLGTSFIVF GIWLCVL
Arabidopsis Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q94AU5]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.