Subcellular Localization
min:
: max
Winner_takes_all: extracellular, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 1
- plasma membrane 2
- golgi 2
- extracellular 2
- endoplasmic reticulum 1
- vacuole 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G009000.1 | Wheat | cytosol | 86.26 | 88.28 |
| TraesCS2D01G009800.1 | Wheat | cytosol | 85.5 | 87.5 |
| TraesCS2B01G101500.1 | Wheat | cytosol | 83.97 | 85.94 |
| TraesCS1D01G078300.1 | Wheat | cytosol | 82.44 | 84.38 |
| TraesCS1B01G094400.1 | Wheat | cytosol | 81.68 | 83.59 |
| Zm00001d004482_P001 | Maize | cytosol, extracellular, mitochondrion, vacuole | 78.63 | 81.1 |
| TraesCS1A01G075900.1 | Wheat | mitochondrion | 83.21 | 78.99 |
| EES11767 | Sorghum | plastid | 77.1 | 78.29 |
| GSMUA_Achr2P09220_001 | Banana | cytosol | 54.2 | 55.91 |
| VIT_11s0016g03470.t01 | Wine grape | extracellular | 52.67 | 50.74 |
| CDY42278 | Canola | extracellular, plasma membrane, vacuole | 52.67 | 50.0 |
| AT5G19570.1 | Thale cress | cytosol, peroxisome, plasma membrane | 51.91 | 49.63 |
| PGSC0003DMT400061606 | Potato | extracellular, nucleus, plasma membrane | 48.85 | 48.48 |
| CDY44927 | Canola | golgi, plasma membrane, vacuole | 52.67 | 48.25 |
| Solyc11g006870.1.1 | Tomato | plasma membrane | 48.09 | 47.73 |
| Bra020049.1-P | Field mustard | golgi, plasma membrane, vacuole | 51.91 | 47.55 |
| KRH41529 | Soybean | endoplasmic reticulum, golgi, mitochondrion | 48.85 | 46.04 |
| KRH60241 | Soybean | cytosol, extracellular, plasma membrane | 51.15 | 33.67 |
Protein Annotations
| EMBL:AK070957 | EnsemblPlants:Os05t0188300-01 | EnsemblPlantsGene:Os05g0188300 | EntrezGene:4338015 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:TMEM234 | PANTHER:PTHR28668 | PFAM:PF10639 | ProteinID:AAV31198.1 | ProteinID:BAF16754.1 |
| ProteinID:BAS92619.1 | ProteinID:EEE62591.1 | RefSeq:XP_015637805.1 | RefSeq:XP_015637806.1 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0000450429 | UniProt:Q60D96 | MapMan:35.2 | : | : | : |
Description
Uncharacterised protein family UPF0546 domain containing protein. (Os05t0188300-01)
Coordinates
chr5:+:5419379..5419987
Molecular Weight (calculated)
13309.3 Da
IEP (calculated)
10.862
GRAVY (calculated)
0.889
Length
131 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIGGDAASM VAVGLVWGTT NALMRRGALV WDHRLRSLPA TSSSVTGVLR RWAELLLTWQ YSAPFAVNLA ASAAFFSLLG AAPISVAVPV TNATTFAATA
101: VAAALLGEGT RAAPAALGTA LIVLGVWVCI S
101: VAAALLGEGT RAAPAALGTA LIVLGVWVCI S
001: MKEDMDKMVA VGLVWGATNA LIRRGALAWD KTKSSSTTES HSPPLQIRRK IMIALRDWIN LLLFWQYSIP FLINLSASAT FFALLSHAPI SLAVPVTNAT
101: TFAATAAFGI LLGEETQIGL ALLGTSFIVF GIWLCVL
101: TFAATAAFGI LLGEETQIGL ALLGTSFIVF GIWLCVL
Arabidopsis Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q94AU5]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.