Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, extracellular, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 2
- vacuole 3
- plasma membrane 2
- golgi 2
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES11767 | Sorghum | plastid | 93.7 | 92.25 |
| TraesCS2A01G009000.1 | Wheat | cytosol | 83.46 | 82.81 |
| TraesCS2D01G009800.1 | Wheat | cytosol | 81.89 | 81.25 |
| TraesCS2B01G101500.1 | Wheat | cytosol | 81.89 | 81.25 |
| TraesCS1B01G094400.1 | Wheat | cytosol | 80.31 | 79.69 |
| TraesCS1D01G078300.1 | Wheat | cytosol | 79.53 | 78.91 |
| Os05t0188300-01 | Rice | cytosol, extracellular, vacuole | 81.1 | 78.63 |
| TraesCS1A01G075900.1 | Wheat | mitochondrion | 80.31 | 73.91 |
| GSMUA_Achr2P09220_001 | Banana | cytosol | 55.91 | 55.91 |
| AT5G19570.1 | Thale cress | cytosol, peroxisome, plasma membrane | 54.33 | 50.37 |
| CDY42278 | Canola | extracellular, plasma membrane, vacuole | 54.33 | 50.0 |
| VIT_11s0016g03470.t01 | Wine grape | extracellular | 52.76 | 49.26 |
| Bra020049.1-P | Field mustard | golgi, plasma membrane, vacuole | 53.54 | 47.55 |
| CDY44927 | Canola | golgi, plasma membrane, vacuole | 53.54 | 47.55 |
| PGSC0003DMT400061606 | Potato | extracellular, nucleus, plasma membrane | 48.03 | 46.21 |
| KRH41529 | Soybean | endoplasmic reticulum, golgi, mitochondrion | 49.61 | 45.32 |
| Solyc11g006870.1.1 | Tomato | plasma membrane | 46.46 | 44.7 |
| KRH60241 | Soybean | cytosol, extracellular, plasma membrane | 51.97 | 33.17 |
Protein Annotations
| EnsemblPlants:Zm00001d004482_P001 | EnsemblPlants:Zm00001d004482_T001 | EnsemblPlantsGene:Zm00001d004482 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:TMEM234 | PANTHER:PTHR28668 | PFAM:PF10639 | ProteinID:ONM19010.1 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI000221B20C | UniProt:A0A1D6EFQ3 | MapMan:35.2 | : | : | : |
Description
transmembrane-like protein
Coordinates
chr2:+:114558262..114558645
Molecular Weight (calculated)
12978.9 Da
IEP (calculated)
11.902
GRAVY (calculated)
0.759
Length
127 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAGRGDAAS MVAVGLVWGA TNALMRRGAL VWDRRARACP SGNVLRRWAE LLLTWQYSAP FAANLSASAA FFALLGGAPI SVAVPVTNAV TFAATAAAAA
101: ALGERVRPAP AVLGTTLIVL GVWVCIS
101: ALGERVRPAP AVLGTTLIVL GVWVCIS
001: MKEDMDKMVA VGLVWGATNA LIRRGALAWD KTKSSSTTES HSPPLQIRRK IMIALRDWIN LLLFWQYSIP FLINLSASAT FFALLSHAPI SLAVPVTNAT
101: TFAATAAFGI LLGEETQIGL ALLGTSFIVF GIWLCVL
101: TFAATAAFGI LLGEETQIGL ALLGTSFIVF GIWLCVL
Arabidopsis Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q94AU5]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.