Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G078300.1 | Wheat | cytosol | 96.09 | 96.09 |
| TraesCS2B01G101500.1 | Wheat | cytosol | 94.53 | 94.53 |
| TraesCS1A01G075900.1 | Wheat | mitochondrion | 96.88 | 89.86 |
| Os05t0188300-01 | Rice | cytosol, extracellular, vacuole | 83.59 | 81.68 |
| Zm00001d004482_P001 | Maize | cytosol, extracellular, mitochondrion, vacuole | 79.69 | 80.31 |
| EES11767 | Sorghum | plastid | 78.91 | 78.29 |
| GSMUA_Achr2P09220_001 | Banana | cytosol | 58.59 | 59.06 |
| CDY42278 | Canola | extracellular, plasma membrane, vacuole | 58.59 | 54.35 |
| VIT_11s0016g03470.t01 | Wine grape | extracellular | 57.03 | 53.68 |
| AT5G19570.1 | Thale cress | cytosol, peroxisome, plasma membrane | 55.47 | 51.82 |
| Bra020049.1-P | Field mustard | golgi, plasma membrane, vacuole | 57.81 | 51.75 |
| CDY44927 | Canola | golgi, plasma membrane, vacuole | 57.81 | 51.75 |
| PGSC0003DMT400061606 | Potato | extracellular, nucleus, plasma membrane | 51.56 | 50.0 |
| Solyc11g006870.1.1 | Tomato | plasma membrane | 50.78 | 49.24 |
| KRH41529 | Soybean | endoplasmic reticulum, golgi, mitochondrion | 50.78 | 46.76 |
| KRH60241 | Soybean | cytosol, extracellular, plasma membrane | 54.69 | 35.18 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G094400.1 | EnsemblPlantsGene:TraesCS1B01G094400 | InterPro:TMEM234 | PANTHER:PTHR28668 | PFAM:PF10639 | SEG:seg |
| TMHMM:TMhelix | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr1B:+:96314053..96314985
Molecular Weight (calculated)
13152.2 Da
IEP (calculated)
11.612
GRAVY (calculated)
0.868
Length
128 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAVGGDAVS MVAVGLVWGA TNALMRRGAL VWDRRSRSLP VGTGAVRRWA DLLLTWQYSA PFLANLSASA AFFRLLGDSP ISVAVPVTNA TTFAATAVAA
101: ALLGEATRIA PAALGTALIV LGVWVCIV
101: ALLGEATRIA PAALGTALIV LGVWVCIV
001: MKEDMDKMVA VGLVWGATNA LIRRGALAWD KTKSSSTTES HSPPLQIRRK IMIALRDWIN LLLFWQYSIP FLINLSASAT FFALLSHAPI SLAVPVTNAT
101: TFAATAAFGI LLGEETQIGL ALLGTSFIVF GIWLCVL
101: TFAATAAFGI LLGEETQIGL ALLGTSFIVF GIWLCVL
Arabidopsis Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q94AU5]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.