Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42278 | Canola | extracellular, plasma membrane, vacuole | 79.56 | 78.99 |
| CDY44927 | Canola | golgi, plasma membrane, vacuole | 79.56 | 76.22 |
| Bra020049.1-P | Field mustard | golgi, plasma membrane, vacuole | 79.56 | 76.22 |
| VIT_11s0016g03470.t01 | Wine grape | extracellular | 62.04 | 62.5 |
| PGSC0003DMT400061606 | Potato | extracellular, nucleus, plasma membrane | 59.85 | 62.12 |
| Solyc11g006870.1.1 | Tomato | plasma membrane | 57.66 | 59.85 |
| TraesCS1B01G094400.1 | Wheat | cytosol | 51.82 | 55.47 |
| TraesCS2D01G009800.1 | Wheat | cytosol | 51.82 | 55.47 |
| TraesCS2A01G009000.1 | Wheat | cytosol | 51.09 | 54.69 |
| TraesCS2B01G101500.1 | Wheat | cytosol | 51.09 | 54.69 |
| KRH41529 | Soybean | endoplasmic reticulum, golgi, mitochondrion | 55.47 | 54.68 |
| Zm00001d004482_P001 | Maize | cytosol, extracellular, mitochondrion, vacuole | 50.37 | 54.33 |
| TraesCS1D01G078300.1 | Wheat | cytosol | 50.37 | 53.91 |
| GSMUA_Achr2P09220_001 | Banana | cytosol | 49.63 | 53.54 |
| EES11767 | Sorghum | plastid | 49.63 | 52.71 |
| Os05t0188300-01 | Rice | cytosol, extracellular, vacuole | 49.63 | 51.91 |
| TraesCS1A01G075900.1 | Wheat | mitochondrion | 50.37 | 50.0 |
| KRH60241 | Soybean | cytosol, extracellular, plasma membrane | 55.47 | 38.19 |
Protein Annotations
| MapMan:35.2 | EntrezGene:832077 | UniProt:A0A178UIX0 | ProteinID:AED92726.1 | ArrayExpress:AT5G19570 | EnsemblPlantsGene:AT5G19570 |
| RefSeq:AT5G19570 | TAIR:AT5G19570 | RefSeq:AT5G19570-TAIR-G | EnsemblPlants:AT5G19570.1 | TAIR:AT5G19570.1 | EMBL:AY045790 |
| EMBL:AY079360 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_197458.1 |
| ProteinID:OAO93052.1 | PFAM:PF10639 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR28668 | UniProt:Q94AU5 | InterPro:TMEM234 | TMHMM:TMhelix |
| UniParc:UPI00000AAE35 | SEG:seg | : | : | : | : |
Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q94AU5]
Coordinates
chr5:+:6606564..6607321
Molecular Weight (calculated)
14967.5 Da
IEP (calculated)
9.311
GRAVY (calculated)
0.643
Length
137 amino acids
Sequence
(BLAST)
(BLAST)
001: MKEDMDKMVA VGLVWGATNA LIRRGALAWD KTKSSSTTES HSPPLQIRRK IMIALRDWIN LLLFWQYSIP FLINLSASAT FFALLSHAPI SLAVPVTNAT
101: TFAATAAFGI LLGEETQIGL ALLGTSFIVF GIWLCVL
101: TFAATAAFGI LLGEETQIGL ALLGTSFIVF GIWLCVL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.