Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 3
- plasma membrane 2
- endoplasmic reticulum 1
- vacuole 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_06s0080g00970.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G19570.1 | VIT_06s0080g00970.t01 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400061606 | Potato | extracellular, nucleus, plasma membrane | 70.59 | 72.73 |
| Solyc11g006870.1.1 | Tomato | plasma membrane | 69.12 | 71.21 |
| GSMUA_Achr2P09220_001 | Banana | cytosol | 58.82 | 62.99 |
| AT5G19570.1 | Thale cress | cytosol, peroxisome, plasma membrane | 62.5 | 62.04 |
| CDY44927 | Canola | golgi, plasma membrane, vacuole | 64.71 | 61.54 |
| Bra020049.1-P | Field mustard | golgi, plasma membrane, vacuole | 63.97 | 60.84 |
| CDY42278 | Canola | extracellular, plasma membrane, vacuole | 61.03 | 60.14 |
| TraesCS1B01G094400.1 | Wheat | cytosol | 53.68 | 57.03 |
| TraesCS2D01G009800.1 | Wheat | cytosol | 53.68 | 57.03 |
| KRH41529 | Soybean | endoplasmic reticulum, golgi, mitochondrion | 58.09 | 56.83 |
| TraesCS1D01G078300.1 | Wheat | cytosol | 52.94 | 56.25 |
| TraesCS2A01G009000.1 | Wheat | cytosol | 52.94 | 56.25 |
| TraesCS2B01G101500.1 | Wheat | cytosol | 52.94 | 56.25 |
| Zm00001d004482_P001 | Maize | cytosol, extracellular, mitochondrion, vacuole | 49.26 | 52.76 |
| Os05t0188300-01 | Rice | cytosol, extracellular, vacuole | 50.74 | 52.67 |
| TraesCS1A01G075900.1 | Wheat | mitochondrion | 52.94 | 52.17 |
| EES11767 | Sorghum | plastid | 48.53 | 51.16 |
| KRH60241 | Soybean | cytosol, extracellular, plasma membrane | 58.82 | 40.2 |
Protein Annotations
| EntrezGene:100242209 | wikigene:100242209 | MapMan:35.2 | ProteinID:CBI28030 | ProteinID:CBI28030.3 | UniProt:D7TBJ5 |
| EMBL:FN595756 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | EntrezGene:LOC100242209 | wikigene:LOC100242209 |
| PFAM:PF10639 | PANTHER:PTHR28668 | SUPFAM:SSF103481 | InterPro:TMEM234 | TMHMM:TMhelix | UniParc:UPI00019842EA |
| ArrayExpress:VIT_11s0016g03470 | EnsemblPlantsGene:VIT_11s0016g03470 | EnsemblPlants:VIT_11s0016g03470.t01 | RefSeq:XP_002284070 | RefSeq:XP_002284070.1 | SEG:seg |
Description
No Description!
Coordinates
chr11:+:2835857..2836454
Molecular Weight (calculated)
14972.6 Da
IEP (calculated)
10.234
GRAVY (calculated)
0.663
Length
136 amino acids
Sequence
(BLAST)
(BLAST)
001: MIGDIEKMIA VGLVWGSTNA IMRRGALIWD RKVRSSSAQT TKPSTLHQRL LATYKNWLNL LLTWQYSIPF LINLSASATF FAILSDTPIS LAVPVTNATT
101: FAATAVSAML LGEETRVWLA LLGTFLIVLG VWICIM
101: FAATAVSAML LGEETRVWLA LLGTFLIVLG VWICIM
001: MKEDMDKMVA VGLVWGATNA LIRRGALAWD KTKSSSTTES HSPPLQIRRK IMIALRDWIN LLLFWQYSIP FLINLSASAT FFALLSHAPI SLAVPVTNAT
101: TFAATAAFGI LLGEETQIGL ALLGTSFIVF GIWLCVL
101: TFAATAAFGI LLGEETQIGL ALLGTSFIVF GIWLCVL
Arabidopsis Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q94AU5]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.