Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 2
- plasma membrane 3
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400015077 | |
| PGSC0003DMT400050482 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G19570.1 | PGSC0003DMT400015077 | AT5G22290.1 | 21798944 |
| AT5G19570.1 | PGSC0003DMT400050482 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g006870.1.1 | Tomato | plasma membrane | 96.97 | 96.97 |
| VIT_11s0016g03470.t01 | Wine grape | extracellular | 72.73 | 70.59 |
| AT5G19570.1 | Thale cress | cytosol, peroxisome, plasma membrane | 62.12 | 59.85 |
| GSMUA_Achr2P09220_001 | Banana | cytosol | 55.3 | 57.48 |
| Bra020049.1-P | Field mustard | golgi, plasma membrane, vacuole | 62.12 | 57.34 |
| CDY42278 | Canola | extracellular, plasma membrane, vacuole | 59.85 | 57.25 |
| CDY44927 | Canola | golgi, plasma membrane, vacuole | 61.36 | 56.64 |
| KRH41529 | Soybean | endoplasmic reticulum, golgi, mitochondrion | 58.33 | 55.4 |
| TraesCS1B01G094400.1 | Wheat | cytosol | 50.0 | 51.56 |
| TraesCS2D01G009800.1 | Wheat | cytosol | 50.0 | 51.56 |
| TraesCS1D01G078300.1 | Wheat | cytosol | 49.24 | 50.78 |
| TraesCS2A01G009000.1 | Wheat | cytosol | 49.24 | 50.78 |
| TraesCS2B01G101500.1 | Wheat | cytosol | 49.24 | 50.78 |
| Os05t0188300-01 | Rice | cytosol, extracellular, vacuole | 48.48 | 48.85 |
| Zm00001d004482_P001 | Maize | cytosol, extracellular, mitochondrion, vacuole | 46.21 | 48.03 |
| TraesCS1A01G075900.1 | Wheat | mitochondrion | 49.24 | 47.1 |
| EES11767 | Sorghum | plastid | 43.94 | 44.96 |
| KRH60241 | Soybean | cytosol, extracellular, plasma membrane | 58.33 | 38.69 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400061606 | EnsemblPlantsGene:PGSC0003DMG400023982 | EntrezGene:102581260 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:TMEM234 | PANTHER:PTHR28668 | PFAM:PF10639 | PGSC:PGSC0003DMG400023982 | RefSeq:XP_006361482.1 | SEG:seg |
| SUPFAM:SSF103481 | TMHMM:TMhelix | UniParc:UPI0002951CB3 | UniProt:M1C7S6 | MapMan:35.2 | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400023982]
Coordinates
chr11:+:5431156..5431879
Molecular Weight (calculated)
14333.9 Da
IEP (calculated)
7.355
GRAVY (calculated)
0.725
Length
132 amino acids
Sequence
(BLAST)
(BLAST)
001: MIGEVEKMIT VGLVWGATNA LMRKGAIKWD ETIKSLPQPN TPQHPVLTTL QNWLKLLLIW QYSLPFLLNL SASATFFAIL SDTPISLAVP VTNATTFAAT
101: AVFGLILGEE TRVGLALFGT SLIVLGVYIC IM
101: AVFGLILGEE TRVGLALFGT SLIVLGVYIC IM
001: MKEDMDKMVA VGLVWGATNA LIRRGALAWD KTKSSSTTES HSPPLQIRRK IMIALRDWIN LLLFWQYSIP FLINLSASAT FFALLSHAPI SLAVPVTNAT
101: TFAATAAFGI LLGEETQIGL ALLGTSFIVF GIWLCVL
101: TFAATAAFGI LLGEETQIGL ALLGTSFIVF GIWLCVL
Arabidopsis Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q94AU5]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.