Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g068750.1.1 | Tomato | nucleus, plasma membrane | 89.77 | 85.4 |
| PGSC0003DMT400015077 | Potato | nucleus | 63.02 | 66.42 |
| KRH22653 | Soybean | nucleus | 42.33 | 49.06 |
| VIT_06s0080g00970.t01 | Wine grape | nucleus | 44.19 | 48.97 |
| PGSC0003DMT400018364 | Potato | mitochondrion, nucleus | 12.79 | 47.41 |
| CDX70995 | Canola | cytosol | 33.26 | 42.81 |
| AT3G44290.1 | Thale cress | cytosol | 33.26 | 42.69 |
| CDY20351 | Canola | cytosol, golgi, nucleus | 33.49 | 42.48 |
| Bra021471.1-P | Field mustard | cytosol, golgi, nucleus | 33.26 | 42.31 |
| CDY35676 | Canola | cytoskeleton, cytosol, nucleus | 33.72 | 42.27 |
| CDY34714 | Canola | cytosol, golgi, nucleus | 33.02 | 42.01 |
| AT5G22290.1 | Thale cress | cytosol | 33.02 | 41.76 |
| CDY09128 | Canola | cytosol | 33.26 | 41.69 |
| Bra020182.1-P | Field mustard | cytosol | 33.26 | 41.69 |
| CDX88803 | Canola | cytosol | 32.56 | 41.54 |
| Bra006619.1-P | Field mustard | cytosol | 32.33 | 41.25 |
| Bra002403.1-P | Field mustard | cytosol | 30.93 | 41.05 |
| CDX92368 | Canola | cytosol | 31.63 | 40.6 |
| CDY34716 | Canola | nucleus | 26.28 | 38.44 |
| KRH26664 | Soybean | nucleus | 41.86 | 36.51 |
| PGSC0003DMT400079749 | Potato | nucleus | 20.47 | 35.2 |
| PGSC0003DMT400045129 | Potato | nucleus | 20.23 | 26.13 |
| PGSC0003DMT400079791 | Potato | nucleus | 20.47 | 22.0 |
| PGSC0003DMT400060087 | Potato | nucleus | 20.0 | 21.99 |
| PGSC0003DMT400055322 | Potato | nucleus | 24.65 | 18.86 |
| PGSC0003DMT400079789 | Potato | cytosol, nucleus, plastid | 22.56 | 17.86 |
| PGSC0003DMT400060090 | Potato | nucleus | 22.09 | 17.76 |
| PGSC0003DMT400001498 | Potato | nucleus | 25.12 | 16.93 |
| PGSC0003DMT400069511 | Potato | nucleus | 23.95 | 16.35 |
| PGSC0003DMT400073779 | Potato | nucleus | 18.84 | 14.94 |
| PGSC0003DMT400043681 | Potato | nucleus | 19.07 | 13.99 |
| PGSC0003DMT400079995 | Potato | nucleus | 21.4 | 10.21 |
Protein Annotations
| EntrezGene:102578947 | MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR003441 | InterPro:IPR036093 | UniProt:M1BQC7 | InterPro:NAC-dom |
| InterPro:NAC_dom_sf | PFAM:PF02365 | EnsemblPlantsGene:PGSC0003DMG400019615 | PGSC:PGSC0003DMG400019615 | EnsemblPlants:PGSC0003DMT400050482 | PFscan:PS51005 |
| PANTHER:PTHR31989 | PANTHER:PTHR31989:SF40 | SUPFAM:SSF101941 | TMHMM:TMhelix | UniParc:UPI0002951BE5 | SEG:seg |
Description
NAC domain protein [Source:PGSC_GENE;Acc:PGSC0003DMG400019615]
Coordinates
chr11:+:40647737..40652956
Molecular Weight (calculated)
48943.2 Da
IEP (calculated)
8.256
GRAVY (calculated)
-0.560
Length
430 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDEDLLDCS SEKKNGEIVE KSKISNSNGV EISVATASTM FPGFRFCPTD EELISYYLKK KVEGSDKCVE VISEVEIWKH EPWDLPGKSI VQSDNEWFFF
101: SPRGRKYPNG SQSKRATESG YWKATGKERN VKSGTNIIGT KRTLVFHIGR APKGQRTQWI MHEYCMTGNP YYQDSMVVCR LRKNNEFHLN DTPGNQRNHL
201: AVTNDTVDLS RAVQLNGLRG LIDGAECCSK EASSSFSSHS VEQIESGSES DKLNKELPQH HSSSYWKVLL LPLFYTARLL TSVSLYDCDE EDCFADIMKD
301: DIIKLDDSSY KARHNLLPTI TRKLESSTKS PTSQEAQNLM SNRLPFQGTA NRRLKLQTEN VPRGVERSEP HEAIKKNIHA RGISRQLINI IPVKRMKQWP
401: IPLLLVSLML LVVFLCLFGV PQQVKWHYSS
101: SPRGRKYPNG SQSKRATESG YWKATGKERN VKSGTNIIGT KRTLVFHIGR APKGQRTQWI MHEYCMTGNP YYQDSMVVCR LRKNNEFHLN DTPGNQRNHL
201: AVTNDTVDLS RAVQLNGLRG LIDGAECCSK EASSSFSSHS VEQIESGSES DKLNKELPQH HSSSYWKVLL LPLFYTARLL TSVSLYDCDE EDCFADIMKD
301: DIIKLDDSSY KARHNLLPTI TRKLESSTKS PTSQEAQNLM SNRLPFQGTA NRRLKLQTEN VPRGVERSEP HEAIKKNIHA RGISRQLINI IPVKRMKQWP
401: IPLLLVSLML LVVFLCLFGV PQQVKWHYSS
001: MSKEAEMSIA VSALFPGFRF SPTDVELISY YLRRKIDGDE NSVAVIAEVE IYKFEPWDLP EESKLKSENE WFYFCARGRK YPHGSQSRRA TQLGYWKATG
101: KERSVKSGNQ VVGTKRTLVF HIGRAPRGER TEWIMHEYCI HGAPQDALVV CRLRKNADFR ASSTQKMEDG VVQDDGYVGQ RGGLEKEDKS YYESEHQIPN
201: GDIAESSNVV EDQADTDDDC YAEILNDDII KLDEEALKAS QAFRPTNPTH QETISSESSS KRSKCGIKKE STETMNCYAL FRIKNVAGTD SSWRFPNPFK
301: IKKDDSQRLM KNVLATTVFL AILFSFFWTV LIARN
101: KERSVKSGNQ VVGTKRTLVF HIGRAPRGER TEWIMHEYCI HGAPQDALVV CRLRKNADFR ASSTQKMEDG VVQDDGYVGQ RGGLEKEDKS YYESEHQIPN
201: GDIAESSNVV EDQADTDDDC YAEILNDDII KLDEEALKAS QAFRPTNPTH QETISSESSS KRSKCGIKKE STETMNCYAL FRIKNVAGTD SSWRFPNPFK
301: IKKDDSQRLM KNVLATTVFL AILFSFFWTV LIARN
Arabidopsis Description
NTL8NAC domain-containing protein 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIN7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.