Factsheet for PGSC0003DMT400052072

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
plasma membrane 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006495
PGSC0003DMT400071510
PGSC0003DMT400073246
PGSC0003DMT400084737

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40890.1	PGSC0003DMT400084737	AT1G27300.1	21798944
AT5G40890.1	PGSC0003DMT400006495	AT3G16310.1	21798944
AT5G40890.1	PGSC0003DMT400071510	AT4G19030.1	21798944
AT5G40890.1	PGSC0003DMT400073246	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g094060.2.1	Tomato	plasma membrane	95.61	96.99
PGSC0003DMT400017962	Potato	peroxisome, plasma membrane, vacuole	81.27	80.23
VIT_14s0068g02190.t01	Wine grape	plasma membrane	76.23	74.78
KRH57669	Soybean	plasma membrane	73.39	73.1
KRG94508	Soybean	plasma membrane	74.42	72.91
KRH06955	Soybean	plasma membrane	69.25	71.95
Bra028478.1-P	Field mustard	plasma membrane	71.32	71.69
CDX67478	Canola	plasma membrane	71.32	71.69
CDY11722	Canola	plasma membrane	71.32	71.69
AT5G40890.1	Thale cress	plasma membrane	70.93	70.84
VIT_14s0068g02330.t01	Wine grape	cytosol, extracellular	7.49	70.73
Bra030328.1-P	Field mustard	plasma membrane	70.8	70.62
AT3G27170.1	Thale cress	plasma membrane	71.06	70.51
CDY15925	Canola	plasma membrane	70.67	70.49
CDX83663	Canola	plasma membrane	70.93	70.11
CDX99630	Canola	plasma membrane	70.28	70.1
Bra025253.1-P	Field mustard	plasma membrane	70.67	69.86
CDY34173	Canola	plasma membrane	70.28	69.74
CDY13685	Canola	plasma membrane	70.54	69.73
Bra032985.1-P	Field mustard	plasma membrane	70.16	69.35
CDY28488	Canola	plasma membrane	70.16	69.35
GSMUA_Achr3P16100_001	Banana	plasma membrane	63.82	68.14
VIT_00s0316g00020.t01	Wine grape	cytosol	7.24	66.67
TraesCS6B01G126800.1	Wheat	plasma membrane	64.21	63.39
TraesCS6D01G084300.1	Wheat	cytosol, nucleus, plasma membrane	64.34	63.28
TraesCS6B01G126400.1	Wheat	plasma membrane	64.21	63.15
TraesCS6D01G084000.2	Wheat	plasma membrane	63.95	63.14
TraesCS6A01G098600.1	Wheat	plasma membrane	63.31	62.98
Zm00001d046919_P001	Maize	plasma membrane	65.12	62.92
EER90148	Sorghum	plasma membrane	64.99	62.8
TraesCS6A01G098500.2	Wheat	cytosol, peroxisome, plasma membrane	62.14	60.43
HORVU0Hr1G015220.3	Barley	cytosol	27.26	51.34
PGSC0003DMT400025239	Potato	plasma membrane	51.42	51.29
PGSC0003DMT400078919	Potato	plasma membrane	50.26	50.72
PGSC0003DMT400064087	Potato	plasma membrane	50.52	50.45
Os12t0438600-01	Rice	plasma membrane	8.53	43.42

Protein Annotations

EntrezGene:102603214	MapMan:24.2.16	Gene3D:3.10.580.10	InterPro:CBS_dom	InterPro:Cl-channel_core	InterPro:Cl-channel_volt-gated
InterPro:Cl_channel_pln	GO:GO:0003674	GO:GO:0005215	GO:GO:0005216	GO:GO:0005247	GO:GO:0005575
GO:GO:0006810	GO:GO:0006811	GO:GO:0006821	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0034220	GO:GO:0055085	GO:GO:1902476	InterPro:IPR000644	InterPro:IPR014743	UniProt:M1BSR5
PFAM:PF00654	EnsemblPlantsGene:PGSC0003DMG400020215	PGSC:PGSC0003DMG400020215	EnsemblPlants:PGSC0003DMT400052072	PRINTS:PR00762	PRINTS:PR01120
PFscan:PS51371	PANTHER:PTHR11689	PANTHER:PTHR11689:SF67	SMART:SM00116	SUPFAM:SSF54631	SUPFAM:SSF81340
TMHMM:TMhelix	UniParc:UPI0002966315	RefSeq:XP_006338691.1	SEG:seg	:	:

Description

CLC-Nt2 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400020215]

Coordinates

chr2:-:47916146..47919507

Molecular Weight (calculated)

86100.7 Da

IEP (calculated)

7.225

GRAVY (calculated)

0.341

Length

774 amino acids

Sequence
(BLAST)

001: MEEPNGFAEV ATIIDMELEG QHNNEEERES TESNYLRNRT LSSTSVAIVG AKVSHIESLD YEINENDLFK HDWRKRSRLQ TLQYVFIKWT LAFLVGLFTG
101: GVATLISLSI ENISGYKLRA TVNYIDDKRY FMGFAFFAGA NFLLTLVAAF ITVYFAPTAA GPGVPEIKAY LNGVDTPNMF GATTLFVKII GSIGAVSAGL
201: DLGKEEPLIH IGSCIASLLG QGGSDSYKLS WHWLRYFNND RDKRDLITYG SSSGVCAAFR APVAGVLFAL EEVATWWRSA LIWRTFFSTA VVVVVLRIFM
301: DYCRSASCGL FGRGGIIMFD VSDVIVRYHF VDIIPVVIIG VIGGLLGSLY NHVLHKVLRL YNLVNEKGKL HKLLLALSVS LFTSICIYGL PFLAKCKPCD
401: SSLSDSCPGT GETGNFKQFN CPNGYYNDLA TLLLATKEDA IRNIFSLNTG TEFQVISLLI FFLLYCILGV ITFGISVPSG LYIPIILMGS GYGRLLGIAM
501: RPYTKIDQEL FAVLGAASLM AGSMRMTVTV CVIFLELTNN LLLLPITMLV LLIAKSVADC FNPSIYEIIL ELKGLPFLEA HPEAWMRNIT VGELADVKPP
601: VVTLEGIEKV RRIVEVLKYT THNGFPVVDG VIPELHGLVL RTHLLLVLKK KWFLNERRRT EDWEVEEKFT WIDLAERWGK IEDIAVTKDE MEMYVDLHPL
701: INTTPHTVVE SLSVAKAMVA FRQVGLRHMI IVPKYQAAGV FPVVGILTRQ DLRACNILNV FPHLAKSKSI KKGN

Best Arabidopsis Sequence Match ( AT5G40890.1 )
(BLAST)

001: MDEDGNLQIS NSNYNGEEEG EDPENNTLNQ PLLKRHRTLS STPLALVGAK VSHIESLDYE INENDLFKHD WRSRSKAQVF QYIFLKWTLA CLVGLFTGLI
101: ATLINLAVEN IAGYKLLAVG YYIAQDRFWT GLMVFTGANL GLTLVATVLV VYFAPTAAGP GIPEIKAYLN GIDTPNMFGF TTMMVKIVGS IGAVAAGLDL
201: GKEGPLVHIG SCIASLLGQG GPDNHRIKWR WLRYFNNDRD RRDLITCGSA SGVCAAFRSP VGGVLFALEE VATWWRSALL WRTFFSTAVV VVVLRAFIEI
301: CNSGKCGLFG SGGLIMFDVS HVEVRYHAAD IIPVTLIGVF GGILGSLYNH LLHKVLRLYN LINQKGKIHK VLLSLGVSLF TSVCLFGLPF LAECKPCDPS
401: IDEICPTNGR SGNFKQFNCP NGYYNDLSTL LLTTNDDAVR NIFSSNTPNE FGMVSLWIFF GLYCILGLIT FGIATPSGLF LPIILMGSAY GRMLGTAMGS
501: YTNIDQGLYA VLGAASLMAG SMRMTVSLCV IFLELTNNLL LLPITMFVLL IAKTVGDSFN LSIYEIILHL KGLPFLEANP EPWMRNLTVG ELNDAKPPVV
601: TLNGVEKVAN IVDVLRNTTH NAFPVLDGAD QNTGTELHGL ILRAHLVKVL KKRWFLNEKR RTEEWEVREK FTPVELAERE DNFDDVAITS SEMQLYVDLH
701: PLTNTTPYTV VQSMSVAKAL VLFRSVGLRH LLVVPKIQAS GMSPVIGILT RQDLRAYNIL QAFPHLDKHK SGKAR

Arabidopsis Description

CLC-AChloride channel protein CLC-a [Source:UniProtKB/Swiss-Prot;Acc:P92941]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.