Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plasma membrane 3
- extracellular 1
- golgi 1
- endoplasmic reticulum 1
- vacuole 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G084000.2 | Wheat | plasma membrane | 97.17 | 96.43 |
| TraesCS6B01G126800.1 | Wheat | plasma membrane | 96.92 | 96.17 |
| TraesCS6A01G098500.2 | Wheat | cytosol, peroxisome, plasma membrane | 92.03 | 89.95 |
| EER90148 | Sorghum | plasma membrane | 86.5 | 84.02 |
| Zm00001d046919_P001 | Maize | plasma membrane | 85.86 | 83.4 |
| Os12t0438600-01 | Rice | plasma membrane | 14.52 | 74.34 |
| GSMUA_Achr3P16100_001 | Banana | plasma membrane | 68.51 | 73.52 |
| Bra028478.1-P | Field mustard | plasma membrane | 67.48 | 68.18 |
| CDX67478 | Canola | plasma membrane | 67.48 | 68.18 |
| CDY11722 | Canola | plasma membrane | 67.35 | 68.05 |
| Bra030328.1-P | Field mustard | plasma membrane | 67.74 | 67.91 |
| CDY15925 | Canola | plasma membrane | 67.74 | 67.91 |
| AT3G27170.1 | Thale cress | plasma membrane | 67.99 | 67.82 |
| VIT_14s0068g02190.t01 | Wine grape | plasma membrane | 68.77 | 67.81 |
| PGSC0003DMT400017962 | Potato | peroxisome, plasma membrane, vacuole | 68.25 | 67.73 |
| AT5G40890.1 | Thale cress | plasma membrane | 67.35 | 67.61 |
| Solyc02g068080.2.1 | Tomato | peroxisome, plasma membrane, vacuole | 68.12 | 67.6 |
| CDX83663 | Canola | plasma membrane | 67.99 | 67.56 |
| CDY34173 | Canola | plasma membrane | 67.61 | 67.44 |
| Bra025253.1-P | Field mustard | plasma membrane | 67.87 | 67.43 |
| CDY13685 | Canola | plasma membrane | 67.87 | 67.43 |
| CDX99630 | Canola | plasma membrane | 67.1 | 67.27 |
| CDY28488 | Canola | plasma membrane | 67.35 | 66.92 |
| Bra032985.1-P | Field mustard | plasma membrane | 67.35 | 66.92 |
| KRG94508 | Soybean | plasma membrane | 67.61 | 66.58 |
| KRH06955 | Soybean | plasma membrane | 63.75 | 66.58 |
| KRH57669 | Soybean | plasma membrane | 66.32 | 66.41 |
| PGSC0003DMT400052072 | Potato | plasma membrane | 62.98 | 63.31 |
| Solyc02g094060.2.1 | Tomato | plasma membrane | 62.08 | 63.3 |
| VIT_14s0068g02330.t01 | Wine grape | cytosol, extracellular | 6.04 | 57.32 |
| VIT_00s0316g00020.t01 | Wine grape | cytosol | 6.17 | 57.14 |
| TraesCS2A01G309900.1 | Wheat | plasma membrane | 52.7 | 51.12 |
| TraesCS5A01G449500.2 | Wheat | plasma membrane | 47.17 | 48.74 |
| TraesCS3A01G125300.1 | Wheat | cytosol, nucleus, plasma membrane | 50.26 | 48.57 |
| TraesCS3A01G390100.1 | Wheat | plasma membrane, plastid | 48.46 | 47.42 |
| TraesCS2A01G517500.3 | Wheat | plasma membrane | 49.87 | 47.2 |
| TraesCS4A01G277600.2 | Wheat | plasma membrane | 40.36 | 38.96 |
Protein Annotations
| Gene3D:1.10.3080.10 | MapMan:24.2.16 | Gene3D:3.10.580.10 | InterPro:CBS_dom | InterPro:Cl-channel_core | InterPro:Cl-channel_volt-gated |
| InterPro:Cl_channel_pln | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005247 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0006821 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0055085 | InterPro:IPR000644 | InterPro:IPR014743 |
| PFAM:PF00571 | PFAM:PF00654 | PRINTS:PR00762 | PRINTS:PR01120 | PFscan:PS51371 | PANTHER:PTHR11689 |
| PANTHER:PTHR11689:SF67 | SMART:SM00116 | SUPFAM:SSF54631 | SUPFAM:SSF81340 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS6A01G098600 |
| EnsemblPlants:TraesCS6A01G098600.1 | TIGR:cd03685 | TIGR:cd04591 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr6A:+:65797793..65800388
Molecular Weight (calculated)
84919.4 Da
IEP (calculated)
8.279
GRAVY (calculated)
0.370
Length
778 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEETATTAG RKHDDGVDSE DPGSAGNGIS SLEQPLLKKS NTLTANHLAM VGAKVSHIES LDYEIIENDL FKHDWRSRST VEVLQYVFLK WALAFLVGLL
101: TGVIASLINL AIENISGVKM LHMVRLVRDK RYWAGFFYFS GFNLALTFVA AVLCVVFAPT AAGPGIPEIK AYLNGVDTPN MFGAPQLIVK IIGSICAVAS
201: GLDLGKEGPL VHIGACLANL LSQGGSGRFR LRWKWLRFFN NDRDRRDLIT CGASSGVCAA FRSPVGGVLF ALEEVATWWR SALLWRTFFS TATVVVVLRG
301: FIEVCRGGRC GLFGAGGLII FDVGDVTVRY RLGDLLLVTL VGVMGGVLGA LYNHVLHMVL RLYNLINDKG RTAKQALALA VCAFTSVGLY VLPFAVPCTP
401: CDPAFGAACP ATGRSGNFKQ FNCPAGQYND LATLLHATNV DATRNIFSTG TPGEFRLDSL LIFFAIYCVL GLFTFGIAVP SGLFLPIILM GAAYGRIVAL
501: VLQSAVAASI DHGLYAVLGA AALMSGSMRM TVSLCVIFLE LTNNLTLLPM TMFVLLIAKT VGDAFNPSIY EIILDLKGLP FLEPKPEPWM KDLTVGELAA
601: AKPRTISLQV VEKVSTVLEV LRNTGHNGFP VVDRPRPGLS ELHGLVLRAH LVAVLRKRWF LLEKRRTEEW EARERFSSVE LADKNCKMDD LELTPEELEM
701: YIDLHPFTNT TPYTVVETMS VAKAVVLFRS VALRHMLIMP KYQGPEISPL VGILTRQDLR AHNILGAFPH LAKKSKAH
101: TGVIASLINL AIENISGVKM LHMVRLVRDK RYWAGFFYFS GFNLALTFVA AVLCVVFAPT AAGPGIPEIK AYLNGVDTPN MFGAPQLIVK IIGSICAVAS
201: GLDLGKEGPL VHIGACLANL LSQGGSGRFR LRWKWLRFFN NDRDRRDLIT CGASSGVCAA FRSPVGGVLF ALEEVATWWR SALLWRTFFS TATVVVVLRG
301: FIEVCRGGRC GLFGAGGLII FDVGDVTVRY RLGDLLLVTL VGVMGGVLGA LYNHVLHMVL RLYNLINDKG RTAKQALALA VCAFTSVGLY VLPFAVPCTP
401: CDPAFGAACP ATGRSGNFKQ FNCPAGQYND LATLLHATNV DATRNIFSTG TPGEFRLDSL LIFFAIYCVL GLFTFGIAVP SGLFLPIILM GAAYGRIVAL
501: VLQSAVAASI DHGLYAVLGA AALMSGSMRM TVSLCVIFLE LTNNLTLLPM TMFVLLIAKT VGDAFNPSIY EIILDLKGLP FLEPKPEPWM KDLTVGELAA
601: AKPRTISLQV VEKVSTVLEV LRNTGHNGFP VVDRPRPGLS ELHGLVLRAH LVAVLRKRWF LLEKRRTEEW EARERFSSVE LADKNCKMDD LELTPEELEM
701: YIDLHPFTNT TPYTVVETMS VAKAVVLFRS VALRHMLIMP KYQGPEISPL VGILTRQDLR AHNILGAFPH LAKKSKAH
001: MVEEDLNQIG GNSNYNGEGG DPESNTLNQP LVKANRTLSS TPLALVGAKV SHIESLDYEI NENDLFKHDW RKRSKAQVLQ YVFLKWTLAC LVGLFTGLIA
101: TLINLAVENI AGYKLLAVGH FLTQERYVTG LMVLVGANLG LTLVASVLCV CFAPTAAGPG IPEIKAYLNG VDTPNMFGAT TMIVKIVGSI GAVAAGLDLG
201: KEGPLVHIGS CIASLLGQGG TDNHRIKWRW LRYFNNDRDR RDLITCGSAA GVCAAFRSPV GGVLFALEEV ATWWRSALLW RTFFSTAVVV VVLREFIEIC
301: NSGKCGLFGK GGLIMFDVSH VTYTYHVTDI IPVMLIGVIG GILGSLYNHL LHKVLRLYNL INEKGKIHKV LLSLTVSLFT SVCLYGLPFL AKCKPCDPSI
401: DEICPTNGRS GNFKQFHCPK GYYNDLATLL LTTNDDAVRN LFSSNTPNEF GMGSLWIFFV LYCILGLFTF GIATPSGLFL PIILMGAAYG RMLGAAMGSY
501: TSIDQGLYAV LGAAALMAGS MRMTVSLCVI FLELTNNLLL LPITMIVLLI AKTVGDSFNP SIYDIILHLK GLPFLEANPE PWMRNLTVGE LGDAKPPVVT
601: LQGVEKVSNI VDVLKNTTHN AFPVLDEAEV PQVGLATGAT ELHGLILRAH LVKVLKKRWF LTEKRRTEEW EVREKFPWDE LAEREDNFDD VAITSAEMEM
701: YVDLHPLTNT TPYTVMENMS VAKALVLFRQ VGLRHLLIVP KIQASGMCPV VGILTRQDLR AYNILQAFPL LEKSKGGKTH
101: TLINLAVENI AGYKLLAVGH FLTQERYVTG LMVLVGANLG LTLVASVLCV CFAPTAAGPG IPEIKAYLNG VDTPNMFGAT TMIVKIVGSI GAVAAGLDLG
201: KEGPLVHIGS CIASLLGQGG TDNHRIKWRW LRYFNNDRDR RDLITCGSAA GVCAAFRSPV GGVLFALEEV ATWWRSALLW RTFFSTAVVV VVLREFIEIC
301: NSGKCGLFGK GGLIMFDVSH VTYTYHVTDI IPVMLIGVIG GILGSLYNHL LHKVLRLYNL INEKGKIHKV LLSLTVSLFT SVCLYGLPFL AKCKPCDPSI
401: DEICPTNGRS GNFKQFHCPK GYYNDLATLL LTTNDDAVRN LFSSNTPNEF GMGSLWIFFV LYCILGLFTF GIATPSGLFL PIILMGAAYG RMLGAAMGSY
501: TSIDQGLYAV LGAAALMAGS MRMTVSLCVI FLELTNNLLL LPITMIVLLI AKTVGDSFNP SIYDIILHLK GLPFLEANPE PWMRNLTVGE LGDAKPPVVT
601: LQGVEKVSNI VDVLKNTTHN AFPVLDEAEV PQVGLATGAT ELHGLILRAH LVKVLKKRWF LTEKRRTEEW EVREKFPWDE LAEREDNFDD VAITSAEMEM
701: YVDLHPLTNT TPYTVMENMS VAKALVLFRQ VGLRHLLIVP KIQASGMCPV VGILTRQDLR AYNILQAFPL LEKSKGGKTH
Arabidopsis Description
CLC-BChloride channel protein [Source:UniProtKB/TrEMBL;Acc:A0A178VKG6]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.