CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 2
plasma membrane 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, plasma membrane
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
EES02290
EES05123
EES19830

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40890.1	EES05123	AT1G27300.1	21798944
AT5G40890.1	EES02290	AT3G16310.1	21798944
AT5G40890.1	EES19830	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046919_P001	Maize	plasma membrane	96.5	96.5
TraesCS6D01G084300.1	Wheat	cytosol, nucleus, plasma membrane	85.64	87.17
TraesCS6B01G126400.1	Wheat	plasma membrane	85.52	87.04
TraesCS6A01G098600.1	Wheat	plasma membrane	84.02	86.5
TraesCS6B01G126800.1	Wheat	plasma membrane	84.27	86.1
TraesCS6D01G084000.2	Wheat	plasma membrane	84.14	85.97
TraesCS6A01G098500.2	Wheat	cytosol, peroxisome, plasma membrane	83.27	83.79
Os12t0438600-01	Rice	plasma membrane	15.36	80.92
GSMUA_Achr3P16100_001	Banana	plasma membrane	67.29	74.34
HORVU0Hr1G015220.3	Barley	cytosol	36.95	72.02
VIT_14s0068g02190.t01	Wine grape	plasma membrane	68.79	69.84
PGSC0003DMT400017962	Potato	peroxisome, plasma membrane, vacuole	67.29	68.75
CDY11722	Canola	plasma membrane	66.04	68.7
CDX67478	Canola	plasma membrane	66.04	68.7
Bra028478.1-P	Field mustard	plasma membrane	66.04	68.7
Solyc02g068080.2.1	Tomato	peroxisome, plasma membrane, vacuole	67.17	68.62
KRH06955	Soybean	plasma membrane	63.55	68.32
KRH57669	Soybean	plasma membrane	66.17	68.21
KRG94508	Soybean	plasma membrane	67.17	68.1
CDY34173	Canola	plasma membrane	66.29	68.08
Bra025253.1-P	Field mustard	plasma membrane	66.54	68.07
CDX83663	Canola	plasma membrane	66.54	68.07
CDY13685	Canola	plasma membrane	66.54	68.07
Bra030328.1-P	Field mustard	plasma membrane	65.92	68.04
CDY15925	Canola	plasma membrane	65.92	68.04
AT5G40890.1	Thale cress	plasma membrane	65.67	67.87
AT3G27170.1	Thale cress	plasma membrane	65.92	67.69
CDY28488	Canola	plasma membrane	66.17	67.69
Bra032985.1-P	Field mustard	plasma membrane	66.04	67.56
CDX99630	Canola	plasma membrane	65.29	67.4
Solyc02g094060.2.1	Tomato	plasma membrane	62.05	65.14
PGSC0003DMT400052072	Potato	plasma membrane	62.8	64.99
VIT_14s0068g02330.t01	Wine grape	cytosol, extracellular	5.99	58.54
VIT_00s0316g00020.t01	Wine grape	cytosol	6.12	58.33
EES12223	Sorghum	plasma membrane	50.81	51.0
EES01847	Sorghum	cytosol, peroxisome, plasma membrane	49.31	49.69
OQU85125	Sorghum	plasma membrane	50.19	49.33
EES11540	Sorghum	plasma membrane	50.06	49.26
EES06435	Sorghum	plasma membrane	48.19	48.68
KXG37802	Sorghum	plasma membrane	40.2	40.35

Protein Annotations

MapMan:24.2.16	Gene3D:3.10.580.10	EntrezGene:8058450	UniProt:C5Z779	InterPro:CBS_dom	InterPro:Cl-channel_core
InterPro:Cl-channel_volt-gated	InterPro:Cl_channel_pln	EnsemblPlants:EER90148	ProteinID:EER90148	ProteinID:EER90148.1	GO:GO:0003674
GO:GO:0005215	GO:GO:0005216	GO:GO:0005247	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005773	GO:GO:0006810	GO:GO:0006811	GO:GO:0006821	GO:GO:0008150
GO:GO:0009671	GO:GO:0009705	GO:GO:0015706	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085
GO:GO:1902476	GO:GO:1902600	InterPro:IPR000644	InterPro:IPR014743	PFAM:PF00654	PRINTS:PR00762
PRINTS:PR01120	PFscan:PS51371	PANTHER:PTHR11689	PANTHER:PTHR11689:SF67	EnsemblPlantsGene:SORBI_3010G214600	SUPFAM:SSF54631
SUPFAM:SSF81340	unigene:Sbi.1133	TMHMM:TMhelix	UniParc:UPI0001A89B36	RefSeq:XP_002438781.1	SEG:seg

Description

hypothetical protein

Coordinates

chr10:-:55745496..55749099

Molecular Weight (calculated)

87805.5 Da

IEP (calculated)

7.111

GRAVY (calculated)

0.283

Length

801 amino acids

Sequence
(BLAST)

001: MEEEQSPRLG REPATEPSPS LEWPEPECKN DDGVKDPEDP ESTGGGGDGN GISSLEQPLL KRSTTLTASH LAIVGAKVSH IESLDYEIIE NDLFKHDWRS
101: RSNVEVLQYI FLKWAMAFLV GLLTGVIASL INLAIENISG LKMQHMVNLV REKRYWAGFL YFAGVNFALT FVAAVLCVVF APTAAGPGIP EIKAYLNGVD
201: TPNMFGAPQL IVKIIGSIGA VSSGMDLGKE GPLVHIGACL ANLLSQGGEG RWRLRWRWLR YFNNDRDRRD LITCGASSGV CAAFRAPVGG VLFALEEVAT
301: WWRSALLWRT FFSTATVVVV LRGFIEVCRD GRCGMFGEGG LILFDVSDVT VRYHVGDLLP VTLVGVLGGV LGALYNHVLH QVLRLYNLIN AKGRMAKLAL
401: ALAVSVFTSA GLYLLPFAVP CSPCDPAFGD ACPTVGKSGN FKQFNCPDGY YNDLASLLHA TNTDATRNIF STGTAGEFRL DSLLIFFAIY CVLGLFTFGI
501: AVPSGLFLPI ILMGSAYGRM VALVLARFVR IDHGLYAVLG AAALMSGSMR MTVSLCVIFL ELTNNLLLLP ITMFVLLIAK TVGDAFNPSI YEIILDLKGL
601: PFLEPKPETW MKDLAVGELA AAKPRVVTLQ VIEKVSTVVE VLRSTPHNGF PVLDRPRPGV SELHGLVLRS HLMAVLKKRW FLTEKRRTEE WEARERFSST
701: ELAEKSGSID EVAVQLTPEE LDMYIDLHPF TNTTPYTVVE TMSVAKAVVL FRTCALRHML IIPKFQGPEI APIVGILTRQ DLRAHNILGA FPHLANKRKV
801: H

Best Arabidopsis Sequence Match ( AT5G40890.1 )
(BLAST)

001: MDEDGNLQIS NSNYNGEEEG EDPENNTLNQ PLLKRHRTLS STPLALVGAK VSHIESLDYE INENDLFKHD WRSRSKAQVF QYIFLKWTLA CLVGLFTGLI
101: ATLINLAVEN IAGYKLLAVG YYIAQDRFWT GLMVFTGANL GLTLVATVLV VYFAPTAAGP GIPEIKAYLN GIDTPNMFGF TTMMVKIVGS IGAVAAGLDL
201: GKEGPLVHIG SCIASLLGQG GPDNHRIKWR WLRYFNNDRD RRDLITCGSA SGVCAAFRSP VGGVLFALEE VATWWRSALL WRTFFSTAVV VVVLRAFIEI
301: CNSGKCGLFG SGGLIMFDVS HVEVRYHAAD IIPVTLIGVF GGILGSLYNH LLHKVLRLYN LINQKGKIHK VLLSLGVSLF TSVCLFGLPF LAECKPCDPS
401: IDEICPTNGR SGNFKQFNCP NGYYNDLSTL LLTTNDDAVR NIFSSNTPNE FGMVSLWIFF GLYCILGLIT FGIATPSGLF LPIILMGSAY GRMLGTAMGS
501: YTNIDQGLYA VLGAASLMAG SMRMTVSLCV IFLELTNNLL LLPITMFVLL IAKTVGDSFN LSIYEIILHL KGLPFLEANP EPWMRNLTVG ELNDAKPPVV
601: TLNGVEKVAN IVDVLRNTTH NAFPVLDGAD QNTGTELHGL ILRAHLVKVL KKRWFLNEKR RTEEWEVREK FTPVELAERE DNFDDVAITS SEMQLYVDLH
701: PLTNTTPYTV VQSMSVAKAL VLFRSVGLRH LLVVPKIQAS GMSPVIGILT RQDLRAYNIL QAFPHLDKHK SGKAR

Arabidopsis Description

CLC-AChloride channel protein CLC-a [Source:UniProtKB/Swiss-Prot;Acc:P92941]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.