CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 2
plasma membrane 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025474_P003	Maize	plasma membrane	96.12	96.48
TraesCS2A01G309900.1	Wheat	plasma membrane	88.97	88.53
TraesCS2D01G308100.1	Wheat	plasma membrane	89.22	88.45
TraesCS2B01G326900.1	Wheat	plasma membrane	88.97	88.2
OQU85125	Sorghum	plasma membrane	88.47	86.63
GSMUA_Achr6P07410_001	Banana	plasma membrane	81.08	84.46
GSMUA_Achr6P24170_001	Banana	plasma membrane	76.69	84.18
HORVU2Hr1G077080.3	Barley	mitochondrion, peroxisome, plasma membrane, plastid	82.71	81.08
EES01847	Sorghum	cytosol, peroxisome, plasma membrane	69.55	69.81
EES06435	Sorghum	plasma membrane	58.02	58.39
EES11540	Sorghum	plasma membrane	59.02	57.86
EER90148	Sorghum	plasma membrane	51.0	50.81
KXG37802	Sorghum	plasma membrane	45.49	45.49

Protein Annotations

MapMan:24.2.16	Gene3D:3.10.580.10	EntrezGene:8080343	UniProt:C5Y8V8	InterPro:CBS_dom	InterPro:Cl-channel_core
InterPro:Cl-channel_volt-gated	InterPro:Cl_channel_pln	EnsemblPlants:EES12223	ProteinID:EES12223	ProteinID:EES12223.1	GO:GO:0003674
GO:GO:0005215	GO:GO:0005216	GO:GO:0005247	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005773	GO:GO:0006810	GO:GO:0006811	GO:GO:0006821	GO:GO:0008150
GO:GO:0009705	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	GO:GO:1902476	InterPro:IPR000644
InterPro:IPR014743	PFAM:PF00571	PFAM:PF00654	PRINTS:PR00762	PRINTS:PR01120	PFscan:PS51371
PANTHER:PTHR11689	PANTHER:PTHR11689:SF109	SMART:SM00116	EnsemblPlantsGene:SORBI_3006G090500	SUPFAM:SSF54631	SUPFAM:SSF81340
unigene:Sbi.10189	TMHMM:TMhelix	UniParc:UPI0001A87202	RefSeq:XP_002447895.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:-:46063577..46072140

Molecular Weight (calculated)

86605.9 Da

IEP (calculated)

7.380

GRAVY (calculated)

0.322

Length

798 amino acids

Sequence
(BLAST)

001: MDAAHHSPPD AQPERHGSFN YDIESTDGPW RGAGAGQDRS SEALLRYDDR YDDDGPRQPL LRKRTMNTTS QIAIVGANVC PIESLDYEIV ENELFKQDWR
101: SRKKKQIFQY IVLKWSLVLL IGLCTGLVGF FNNLAVENIA GFKLLLTSDL MLKHRYFTAF LAYGGCNLVL AATAAAICAY IAPAAAGSGI PEVKAYLNGV
201: DAYAILAPST LFVKIFGSIL GVSAGFVLGK EGPMVHTGAC IANLLGQGGS RKYHLTCNWL RYFKNDRDRR DLITCGSAAG VAAAFRAPVG GVLFALEEAA
301: SWWRSALLWR TFFTTAVVAV VLRGLIELCR SGKCGLFGQG GLIMFDLSST VPSYSTQDII AIIVLGIIGG VFGGLFNFLL DRILRAYSFI NEKGAPYKIL
401: LTITISIITS ACSYGLPWLA PCTPCPADAV EECPTIGRSG NFKNFQCPPG YYNGLASLFF NTNDDAIRNL FSSGTENEFH MSTLFVFFTA IYCLGLVTYG
501: IAVPSGLFIP VILAGATYGR IVGTLLGPIS DLDPGLFALL GAASFLGGTM RMTVSVCVIL LELTNDLLML PLVMLVLLIS KTIADSFNKG VYDQIVVMKG
601: LPFLEAHAEP HMRHLVAGDV VSGPLISFSG VERVGNIVQA LRITGHNGFP VVDEPPLSEA PELVGLVLRS HLLVLLKGKG FMKEKMKTSG SFVLQRFGAF
701: DFAKPGSGKG LKIEDLDFTD EEMDMYVDLH PITNTSPYTV VETMSLAKAA VLFRALGLRH LLVVPKTPGR PPIVGILTRH DFMPEHIHGL FPNIHKSH

Best Arabidopsis Sequence Match ( AT5G49890.1 )
(BLAST)

001: MDDRHEGDHH DIEVEGGALH GFERKISGIL DDGSVGFRQP LLARNRKNTT SQIAIVGANT CPIESLDYEI FENDFFKQDW RSRKKIEILQ YTFLKWALAF
101: LIGLATGLVG FLNNLGVENI AGFKLLLIGN LMLKEKYFQA FFAFAGCNLI LATAAASLCA FIAPAAAGSG IPEVKAYLNG IDAYSILAPS TLFVKIFGSI
201: FGVAAGFVVG KEGPMVHTGA CIANLLGQGG SKKYRLTWKW LRFFKNDRDR RDLITCGAAA GVAAAFRAPV GGVLFALEEA ASWWRNALLW RTFFTTAVVA
301: VVLRSLIEFC RSGRCGLFGK GGLIMFDVNS GPVLYSTPDL LAIVFLGVIG GVLGSLYNYL VDKVLRTYSI INEKGPRFKI MLVMAVSILS SCCAFGLPWL
401: SQCTPCPIGI EEGKCPSVGR SSIYKSFQCP PNHYNDLSSL LLNTNDDAIR NLFTSRSENE FHISTLAIFF VAVYCLGIIT YGIAIPSGLF IPVILAGASY
501: GRLVGRLLGP VSQLDVGLFS LLGAASFLGG TMRMTVSLCV ILLELTNNLL MLPLVMLVLL ISKTVADCFN RGVYDQIVTM KGLPYMEDHA EPYMRNLVAK
601: DVVSGALISF SRVEKVGVIW QALKMTRHNG FPVIDEPPFT EASELCGIAL RSHLLVLLQG KKFSKQRTTF GSQILRSCKA RDFGKAGLGK GLKIEDLDLS
701: EEEMEMYVDL HPITNTSPYT VLETLSLAKA AILFRQLGLR HLCVVPKTPG RPPIVGILTR HDFMPEHVLG LYPHIDPLK

Arabidopsis Description

CLC-CChloride channel protein CLC-c [Source:UniProtKB/Swiss-Prot;Acc:Q96282]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.