Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- plasma membrane 5
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P24170_001 | Banana | plasma membrane | 83.94 | 88.45 |
| EES12223 | Sorghum | plasma membrane | 84.46 | 81.08 |
| Zm00001d025474_P003 | Maize | plasma membrane | 83.55 | 80.5 |
| TraesCS3D01G126700.1 | Wheat | plasma membrane | 59.4 | 79.41 |
| Os02t0558100-02 | Rice | plasma membrane | 82.9 | 78.98 |
| OQU85125 | Sorghum | plasma membrane | 83.29 | 78.28 |
| TraesCS2A01G309900.1 | Wheat | plasma membrane | 81.85 | 78.18 |
| TraesCS2D01G308100.1 | Wheat | plasma membrane | 81.98 | 78.01 |
| TraesCS2B01G326900.1 | Wheat | plasma membrane | 81.98 | 78.01 |
| Zm00001d016855_P002 | Maize | plasma membrane | 82.51 | 76.33 |
| TraesCS3B01G144700.1 | Wheat | cytosol, nucleus, plasma membrane | 80.03 | 76.15 |
| TraesCS3A01G125300.1 | Wheat | cytosol, nucleus, plasma membrane | 80.03 | 76.15 |
| TraesCS3D01G126600.1 | Wheat | plasma membrane | 79.77 | 75.9 |
| GSMUA_Achr8P08450_001 | Banana | plasma membrane | 74.28 | 71.66 |
| HORVU2Hr1G077080.3 | Barley | mitochondrion, peroxisome, plasma membrane, plastid | 75.59 | 71.13 |
| GSMUA_Achr3P21820_001 | Banana | plasma membrane | 78.72 | 67.22 |
| GSMUA_Achr5P23490_001 | Banana | plasma membrane | 63.58 | 61.96 |
| GSMUA_Achr6P02920_001 | Banana | plasma membrane | 60.31 | 61.11 |
| GSMUA_Achr3P13250_001 | Banana | cytosol, peroxisome, plasma membrane | 58.62 | 57.64 |
| GSMUA_Achr1P26050_001 | Banana | plasma membrane | 57.05 | 56.61 |
| GSMUA_Achr3P16100_001 | Banana | plasma membrane | 52.35 | 55.31 |
| GSMUA_Achr4P06890_001 | Banana | plasma membrane | 42.56 | 47.94 |
| GSMUA_Achr4P06880_001 | Banana | cytosol | 4.83 | 40.22 |
| GSMUA_Achr7P27080_001 | Banana | mitochondrion, plasma membrane | 13.19 | 35.82 |
Protein Annotations
| MapMan:24.2.16 | Gene3D:3.10.580.10 | InterPro:CBS_dom | InterPro:Cl-channel_core | InterPro:Cl-channel_volt-gated | InterPro:Cl_channel_pln |
| GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005216 | GO:GO:0005247 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0006811 | GO:GO:0006821 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0034220 |
| GO:GO:0055085 | GO:GO:1902476 | EnsemblPlantsGene:GSMUA_Achr6G07410_001 | EnsemblPlants:GSMUA_Achr6P07410_001 | EnsemblPlants:GSMUA_Achr6T07410_001 | InterPro:IPR000644 |
| InterPro:IPR014743 | UniProt:M0T4Z0 | PFAM:PF00571 | PFAM:PF00654 | PRINTS:PR00762 | PRINTS:PR01120 |
| PFscan:PS51371 | PANTHER:PTHR11689 | PANTHER:PTHR11689:SF109 | SMART:SM00116 | SUPFAM:SSF54631 | SUPFAM:SSF81340 |
| TMHMM:TMhelix | UniParc:UPI000294A623 | SEG:seg | : | : | : |
Description
Chloride channel protein CLC-c [Source:GMGC_GENE;Acc:GSMUA_Achr6G07410_001]
Coordinates
chr6:-:5038193..5044599
Molecular Weight (calculated)
83404.3 Da
IEP (calculated)
7.927
GRAVY (calculated)
0.365
Length
766 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGAWREIER NGSGLYENEE AGSMREPLLR KRTMNTTSQI AIVGANVCTI ESLDYEIVEN DLFEQDWRSR KKVQIFQYIV LKWTLALLIG LATGLVGFFN
101: NLAVENIAGF KLLLTSNLML EHRYFAAFLA YCSTNAILAA SAAALCAYVA PAAAGSGIPE VKAYLNGVDA YSILAPSTLF VKIFGSIGGV SAGFVLGKEG
201: PMVHTGACIA NLLGQGGSRK YHLTWTWLRY FKNDRDRRDL ITCGSAAGVA AAFRAPVGGV LFALEEAASW WRSALLWRTF FTTAVVAVSL RSLIEYCRSG
301: KCGLFGKGGL IMFDVSSSVT TYSTPDLIVI IVLGVIGGVF GALFNYLLDR ILRTYSFINE KGAPFKILLT VAISILTSCC SYGLPWLASC TPCPAHLQEQ
401: CPTIGRSGNF KNFQCPPGHY NDLASLFLNT NDDAIRNLFS AGTDNEFHMS TLFVFFAAVY CLGLVTYGIA VPSGLFIPVI LAGATYGRMV GTLLGPISDL
501: DAGLFALLGA ASFLGGTMRM TVSVCVILLE LTNDLLLLPL VMLVLLISKT VADSFNKGVY DQIVRMKGLP FMEAHAEPHM RHLVARDVLS GPPVSFSGVE
601: KVGTIVHALR LTGHNGFPVV DEPPFSDAPE LVGLVLRSHL LILLKGKRFS KERVKTGVRE MLQRFGAFDF AKAGSGKGLK LEDLNILEEE MDMFIDLHPV
701: TNKSPYTVVE TMSLAKAAIL FRELGLRHLC VVPKTPGTPP IVGILTRHDF MPEHILGLFP HHHSHK
101: NLAVENIAGF KLLLTSNLML EHRYFAAFLA YCSTNAILAA SAAALCAYVA PAAAGSGIPE VKAYLNGVDA YSILAPSTLF VKIFGSIGGV SAGFVLGKEG
201: PMVHTGACIA NLLGQGGSRK YHLTWTWLRY FKNDRDRRDL ITCGSAAGVA AAFRAPVGGV LFALEEAASW WRSALLWRTF FTTAVVAVSL RSLIEYCRSG
301: KCGLFGKGGL IMFDVSSSVT TYSTPDLIVI IVLGVIGGVF GALFNYLLDR ILRTYSFINE KGAPFKILLT VAISILTSCC SYGLPWLASC TPCPAHLQEQ
401: CPTIGRSGNF KNFQCPPGHY NDLASLFLNT NDDAIRNLFS AGTDNEFHMS TLFVFFAAVY CLGLVTYGIA VPSGLFIPVI LAGATYGRMV GTLLGPISDL
501: DAGLFALLGA ASFLGGTMRM TVSVCVILLE LTNDLLLLPL VMLVLLISKT VADSFNKGVY DQIVRMKGLP FMEAHAEPHM RHLVARDVLS GPPVSFSGVE
601: KVGTIVHALR LTGHNGFPVV DEPPFSDAPE LVGLVLRSHL LILLKGKRFS KERVKTGVRE MLQRFGAFDF AKAGSGKGLK LEDLNILEEE MDMFIDLHPV
701: TNKSPYTVVE TMSLAKAAIL FRELGLRHLC VVPKTPGTPP IVGILTRHDF MPEHILGLFP HHHSHK
001: MDDRHEGDHH DIEVEGGALH GFERKISGIL DDGSVGFRQP LLARNRKNTT SQIAIVGANT CPIESLDYEI FENDFFKQDW RSRKKIEILQ YTFLKWALAF
101: LIGLATGLVG FLNNLGVENI AGFKLLLIGN LMLKEKYFQA FFAFAGCNLI LATAAASLCA FIAPAAAGSG IPEVKAYLNG IDAYSILAPS TLFVKIFGSI
201: FGVAAGFVVG KEGPMVHTGA CIANLLGQGG SKKYRLTWKW LRFFKNDRDR RDLITCGAAA GVAAAFRAPV GGVLFALEEA ASWWRNALLW RTFFTTAVVA
301: VVLRSLIEFC RSGRCGLFGK GGLIMFDVNS GPVLYSTPDL LAIVFLGVIG GVLGSLYNYL VDKVLRTYSI INEKGPRFKI MLVMAVSILS SCCAFGLPWL
401: SQCTPCPIGI EEGKCPSVGR SSIYKSFQCP PNHYNDLSSL LLNTNDDAIR NLFTSRSENE FHISTLAIFF VAVYCLGIIT YGIAIPSGLF IPVILAGASY
501: GRLVGRLLGP VSQLDVGLFS LLGAASFLGG TMRMTVSLCV ILLELTNNLL MLPLVMLVLL ISKTVADCFN RGVYDQIVTM KGLPYMEDHA EPYMRNLVAK
601: DVVSGALISF SRVEKVGVIW QALKMTRHNG FPVIDEPPFT EASELCGIAL RSHLLVLLQG KKFSKQRTTF GSQILRSCKA RDFGKAGLGK GLKIEDLDLS
701: EEEMEMYVDL HPITNTSPYT VLETLSLAKA AILFRQLGLR HLCVVPKTPG RPPIVGILTR HDFMPEHVLG LYPHIDPLK
101: LIGLATGLVG FLNNLGVENI AGFKLLLIGN LMLKEKYFQA FFAFAGCNLI LATAAASLCA FIAPAAAGSG IPEVKAYLNG IDAYSILAPS TLFVKIFGSI
201: FGVAAGFVVG KEGPMVHTGA CIANLLGQGG SKKYRLTWKW LRFFKNDRDR RDLITCGAAA GVAAAFRAPV GGVLFALEEA ASWWRNALLW RTFFTTAVVA
301: VVLRSLIEFC RSGRCGLFGK GGLIMFDVNS GPVLYSTPDL LAIVFLGVIG GVLGSLYNYL VDKVLRTYSI INEKGPRFKI MLVMAVSILS SCCAFGLPWL
401: SQCTPCPIGI EEGKCPSVGR SSIYKSFQCP PNHYNDLSSL LLNTNDDAIR NLFTSRSENE FHISTLAIFF VAVYCLGIIT YGIAIPSGLF IPVILAGASY
501: GRLVGRLLGP VSQLDVGLFS LLGAASFLGG TMRMTVSLCV ILLELTNNLL MLPLVMLVLL ISKTVADCFN RGVYDQIVTM KGLPYMEDHA EPYMRNLVAK
601: DVVSGALISF SRVEKVGVIW QALKMTRHNG FPVIDEPPFT EASELCGIAL RSHLLVLLQG KKFSKQRTTF GSQILRSCKA RDFGKAGLGK GLKIEDLDLS
701: EEEMEMYVDL HPITNTSPYT VLETLSLAKA AILFRQLGLR HLCVVPKTPG RPPIVGILTR HDFMPEHVLG LYPHIDPLK
Arabidopsis Description
CLC-CChloride channel protein CLC-c [Source:UniProtKB/Swiss-Prot;Acc:Q96282]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.