Factsheet for Os02t0558100-02

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

vacuole: 16249326

vacuole: 18557835
plasma membrane: 27800704
plasma membrane: 28056797

gfp PMID: 16249326 doi

A Nakamura, A Fukuda, S Sakai, Y Tanaka

Graduate School of Life and Environmental Sciences, University of Tsukuba, Ibaraki, Japan.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 18557835 doi

SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis

Department of Biology Area 9, University of York, York YO10 5DD, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU85125	Sorghum	plasma membrane	91.54	90.31
TraesCS3D01G126700.1	Wheat	plasma membrane	63.68	89.35
Zm00001d016855_P002	Maize	plasma membrane	90.55	87.92
TraesCS3B01G144700.1	Wheat	cytosol, nucleus, plasma membrane	87.94	87.83
TraesCS3A01G125300.1	Wheat	cytosol, nucleus, plasma membrane	87.69	87.58
TraesCS3D01G126600.1	Wheat	plasma membrane	87.31	87.2
GSMUA_Achr6P07410_001	Banana	plasma membrane	78.98	82.9
GSMUA_Achr6P24170_001	Banana	plasma membrane	74.25	82.12
Os01t0876100-00	Rice	plasma membrane	69.53	64.11
Os08t0300300-01	Rice	plasma membrane	58.46	59.05
Os12t0438600-01	Rice	plasma membrane	7.46	39.47
Os03t0695700-01	Rice	extracellular, plasma membrane	12.44	37.17
Os03t0695600-01	Rice	cytosol	0.25	0.94

Protein Annotations

MapMan:24.2.16	Gene3D:3.10.580.10	EntrezGene:4329678	ProteinID:BAD16425.1	ProteinID:BAS79232.1	ProteinID:BAS79233.1
InterPro:CBS_dom	InterPro:Cl-channel_core	InterPro:Cl-channel_volt-gated	InterPro:Cl_channel_pln	ProteinID:EEE57198.1	GO:GO:0003674
GO:GO:0005215	GO:GO:0005247	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005773	GO:GO:0006810	GO:GO:0006811	GO:GO:0006821	GO:GO:0008150	GO:GO:0009705
GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	GO:GO:1902476	InterPro:IPR000644	InterPro:IPR014743
EnsemblPlantsGene:Os02g0558100	EnsemblPlants:Os02t0558100-02	PFAM:PF00571	PFAM:PF00654	PRINTS:PR00762	PRINTS:PR01120
PFscan:PS51371	PANTHER:PTHR11689	PANTHER:PTHR11689:SF109	UniProt:Q6YVX5	SMART:SM00116	SUPFAM:SSF54631
SUPFAM:SSF81340	TMHMM:TMhelix	UniParc:UPI0000358D3C	RefSeq:XP_015626588.1	RefSeq:XP_015626589.1	RefSeq:XP_015626590.1
RefSeq:XP_015626591.1	RefSeq:XP_015626592.1	RefSeq:XP_015626593.1	SEG:seg	:	:

Description

CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 3Similar to Chloride channel (Fragment). (Os02t0558100-01);Chloride channel (Fragment). (Os02t0558100-02);Similar to Chloride channel (Fragment). (Os02t0558100-03)

Coordinates

chr2:-:21150709..21161368

Molecular Weight (calculated)

86995.4 Da

IEP (calculated)

7.806

GRAVY (calculated)

0.339

Length

804 amino acids

Sequence
(BLAST)

001: MEGQSQHRAP EREGSHNYDI ESTDGSGGLW RRNGSSSGAL LRYNDSGGGR SGSAGEPLLR KRTMNTTSQI AIVGANVCPI ESLDYEVVEN DLFKQDWRSR
101: KKKQIFQYIV LKWTLVLLIG LLTGLVGFFN NLAVENIAGF KLLLTGNLML KERYLTAFFA YGGCNLVLAA AAAAICAYIA PAAAGSGIPE VKAYLNGVDA
201: YSILAPSTLF VKIFGSILGV SAGFVLGKEG PMVHTGACIA NLLGQGGSRK YRLTCNWLRY FKNDRDRRDL ITCGSAAGVA AAFRAPVGGV LFALEEAASW
301: WRSALLWRAF FTTAVVAVVL RSLIEFCRSG KCGLFGQGGL IMFDLSSTVA TYSTPDLIAI IILGIIGGIF GGLFNFLLDK VLRVYSIINE RGAPFKILLT
401: ITISIITSMC SYGLPWLAAC TPCPVDAVEQ CPTIGRSGNF KNFQCPPGHY NDLASLFFNT NDDAIRNLFS NGTESEFHMS TLFIFFTAVY CLGILTYGVA
501: VPSGLFIPVI LAGATYGRIV GTLLGSISDL DPGLFALLGA ASFLGGTMRM TVSVCVILLE LTNDLAMLPL VMLVLLISKT IADNFNKGVY DQIVVMKGLP
601: YMEAHAEPYM RHLVAGDVVS GPLITFSGVE KVGNIVHALR FTGHNGFPVV DEPPLTEAPE LVGLVTRSHL LVLLNGKMFM KDQLKTSGSF VLQRFGAFDF
701: AKPGSGKGLK IQDLDFTDEE MEMYVDLHPV TNTSPYTVVE TMSLAKAAIL FRALGLRHLL VVPKTPDRPP IVGILTRHDF VEEHIHGLFP NLNPHKFHST
801: SMGG

Best Arabidopsis Sequence Match ( AT5G49890.1 )
(BLAST)

001: MDDRHEGDHH DIEVEGGALH GFERKISGIL DDGSVGFRQP LLARNRKNTT SQIAIVGANT CPIESLDYEI FENDFFKQDW RSRKKIEILQ YTFLKWALAF
101: LIGLATGLVG FLNNLGVENI AGFKLLLIGN LMLKEKYFQA FFAFAGCNLI LATAAASLCA FIAPAAAGSG IPEVKAYLNG IDAYSILAPS TLFVKIFGSI
201: FGVAAGFVVG KEGPMVHTGA CIANLLGQGG SKKYRLTWKW LRFFKNDRDR RDLITCGAAA GVAAAFRAPV GGVLFALEEA ASWWRNALLW RTFFTTAVVA
301: VVLRSLIEFC RSGRCGLFGK GGLIMFDVNS GPVLYSTPDL LAIVFLGVIG GVLGSLYNYL VDKVLRTYSI INEKGPRFKI MLVMAVSILS SCCAFGLPWL
401: SQCTPCPIGI EEGKCPSVGR SSIYKSFQCP PNHYNDLSSL LLNTNDDAIR NLFTSRSENE FHISTLAIFF VAVYCLGIIT YGIAIPSGLF IPVILAGASY
501: GRLVGRLLGP VSQLDVGLFS LLGAASFLGG TMRMTVSLCV ILLELTNNLL MLPLVMLVLL ISKTVADCFN RGVYDQIVTM KGLPYMEDHA EPYMRNLVAK
601: DVVSGALISF SRVEKVGVIW QALKMTRHNG FPVIDEPPFT EASELCGIAL RSHLLVLLQG KKFSKQRTTF GSQILRSCKA RDFGKAGLGK GLKIEDLDLS
701: EEEMEMYVDL HPITNTSPYT VLETLSLAKA AILFRQLGLR HLCVVPKTPG RPPIVGILTR HDFMPEHVLG LYPHIDPLK

Arabidopsis Description

CLC-CChloride channel protein CLC-c [Source:UniProtKB/Swiss-Prot;Acc:Q96282]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.