Factsheet for Os01t0876100-00

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 5
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	plasma membrane
PProwler:	secretory
TargetP:	secretory
YLoc:	plasma membrane

plasma membrane: 27800704
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042651_P001	Maize	plasma membrane	72.36	79.47
HORVU3Hr1G081920.1	Barley	plasma membrane, plastid	71.33	78.73
TraesCS3D01G379600.1	Wheat	plasma membrane, plastid	71.33	78.34
TraesCS3A01G390100.1	Wheat	plasma membrane, plastid	71.22	78.11
TraesCS3B01G418700.1	Wheat	mitochondrion	70.99	77.86
EES01847	Sorghum	cytosol, peroxisome, plasma membrane	70.41	77.23
Os02t0558100-02	Rice	plasma membrane	64.11	69.53
VIT_12s0035g01720.t01	Wine grape	plasma membrane	60.89	68.34
Solyc10g044470.1.1	Tomato	plasma membrane	59.17	67.54
VIT_07s0130g00400.t01	Wine grape	cytosol	60.32	67.44
PGSC0003DMT400025239	Potato	plasma membrane	59.17	66.49
Solyc01g103140.2.1	Tomato	plasma membrane	58.95	66.32
PGSC0003DMT400064087	Potato	plasma membrane	58.95	66.32
AT5G49890.1	Thale cress	plasma membrane	59.06	66.11
Bra000596.1-P	Field mustard	plasma membrane	58.72	66.06
CDY21447	Canola	plasma membrane	58.72	66.06
CDY16376	Canola	plasma membrane	58.6	65.94
CDX91539	Canola	plasma membrane	58.6	65.94
CDX83179	Canola	plasma membrane	58.6	65.94
Bra022507.1-P	Field mustard	plasma membrane	58.6	65.94
KRH38787	Soybean	cytosol	57.22	63.24
KRH09287	Soybean	cytosol, nucleus, plasma membrane	57.22	62.69
Os08t0300300-01	Rice	plasma membrane	50.34	55.15
Os03t0695700-01	Rice	extracellular, plasma membrane	11.93	38.66
Os12t0438600-01	Rice	plasma membrane	5.85	33.55
Os03t0695600-01	Rice	cytosol	0.11	0.47

Protein Annotations

MapMan:24.2.16	Gene3D:3.10.580.10	UniProt:A0A0P0VB46	ProteinID:BAS75501.1	InterPro:CBS_dom	InterPro:Cl-channel_core
InterPro:Cl-channel_volt-gated	InterPro:Cl_channel_pln	GO:GO:0003674	GO:GO:0005215	GO:GO:0005247	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0006810
GO:GO:0006811	GO:GO:0006821	GO:GO:0008150	GO:GO:0009705	GO:GO:0016020	GO:GO:0016021
GO:GO:0055085	GO:GO:1902476	InterPro:IPR000644	InterPro:IPR014743	EnsemblPlantsGene:Os01g0876100	EnsemblPlants:Os01t0876100-00
PFAM:PF00571	PFAM:PF00654	PRINTS:PR00762	PRINTS:PR01120	PFscan:PS51371	PANTHER:PTHR11689
PANTHER:PTHR11689:SF84	SMART:SM00116	SUPFAM:SSF54631	SUPFAM:SSF81340	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI00039392A6	SEG:seg	:	:	:	:

Description

CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 1Similar to Chloride channel. (Os01t0876100-00)

Coordinates

chr1:+:38013613..38021799

Molecular Weight (calculated)

94542.9 Da

IEP (calculated)

8.651

GRAVY (calculated)

0.322

Length

872 amino acids

Sequence
(BLAST)

001: WRRAVVRHCV CVVLVHLAGD LPAVERRVVG HVEHHPGRRV DVDGEEALVS TEESLPERRQ RQDAAAGEEH EGHLGHALER VRATGRRRRH RSAPEQLLVR
101: HIVHEPRRSH ELREATAAAA AVAVHGGGLE RPLLRRRGTN TTSQMAIVGA NVCPIESLDY ELVENEVYKQ DWRSRGKLQI FHYQILKWVL ALLVGLIVGL
201: IGFFNNIAVE NIAGFKLLLT TNLMLQNRYK AAFLWFISCN AMLAAAAAAL CAYFGPAAAG SGIPEVKAYL NGVDAPSILA PSTLFVKIVG SIFGVSAGFV
301: LGKEGPMVHT GACVASFLGQ GGSRKYGFTW NWLRYFKNDL DRRDLITCGA AAGVTAAFRA PVGGVLFALE EATSWWRSAL LWRTFSTTAV AAMVLRSLIE
401: YCRSGNCGLF GKGGLIMFDV SSQVTSYTTM DLAAVVLLAI VGGLLGALFN FLLNRILRVY SYINEKGAPY KIILTVVISL VTSCCSFGLP WLTACTPCPP
501: ELAASGHCPT IGRSGNFKNF RCPPGQYNAM ASLFLNTNDD AIRNLFSGGT ESEFGVPMLL AFFTAVYSLG LVTYGVAVPS GLFIPVILSG ASFGRLLGKL
601: LGVLTGLDTG LFALLGAASF LGGTMRMTVS VCVILLELTN DLLLLPLIML VLLVSKTVAD CFNKGVYEQM VRMKGLPYLE AHAEPCMRSL VAGDVVSAPL
701: IAFSSVESVG TVVDTLRRTG HNGFPVIEDA PFAPEPELCG LVLRSHLLVL LRAKTFTADR VKTGAAEVFR KLAPFDFAKP GSGKGLTVDD LDLTEEEMAM
801: YVDLHPIANR SPYTVVENMS LAKAAVLFRQ LGLRHMCVVP RTPGRPPVVG ILTRHDFMPG YIRGLFPNVL RE

Best Arabidopsis Sequence Match ( AT5G49890.1 )
(BLAST)

001: MDDRHEGDHH DIEVEGGALH GFERKISGIL DDGSVGFRQP LLARNRKNTT SQIAIVGANT CPIESLDYEI FENDFFKQDW RSRKKIEILQ YTFLKWALAF
101: LIGLATGLVG FLNNLGVENI AGFKLLLIGN LMLKEKYFQA FFAFAGCNLI LATAAASLCA FIAPAAAGSG IPEVKAYLNG IDAYSILAPS TLFVKIFGSI
201: FGVAAGFVVG KEGPMVHTGA CIANLLGQGG SKKYRLTWKW LRFFKNDRDR RDLITCGAAA GVAAAFRAPV GGVLFALEEA ASWWRNALLW RTFFTTAVVA
301: VVLRSLIEFC RSGRCGLFGK GGLIMFDVNS GPVLYSTPDL LAIVFLGVIG GVLGSLYNYL VDKVLRTYSI INEKGPRFKI MLVMAVSILS SCCAFGLPWL
401: SQCTPCPIGI EEGKCPSVGR SSIYKSFQCP PNHYNDLSSL LLNTNDDAIR NLFTSRSENE FHISTLAIFF VAVYCLGIIT YGIAIPSGLF IPVILAGASY
501: GRLVGRLLGP VSQLDVGLFS LLGAASFLGG TMRMTVSLCV ILLELTNNLL MLPLVMLVLL ISKTVADCFN RGVYDQIVTM KGLPYMEDHA EPYMRNLVAK
601: DVVSGALISF SRVEKVGVIW QALKMTRHNG FPVIDEPPFT EASELCGIAL RSHLLVLLQG KKFSKQRTTF GSQILRSCKA RDFGKAGLGK GLKIEDLDLS
701: EEEMEMYVDL HPITNTSPYT VLETLSLAKA AILFRQLGLR HLCVVPKTPG RPPIVGILTR HDFMPEHVLG LYPHIDPLK

Arabidopsis Description

CLC-CChloride channel protein CLC-c [Source:UniProtKB/Swiss-Prot;Acc:Q96282]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.