CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042651_P001	Maize	plasma membrane	91.57	91.69
HORVU3Hr1G081920.1	Barley	plasma membrane, plastid	78.49	78.99
TraesCS3D01G379600.1	Wheat	plasma membrane, plastid	77.48	77.58
TraesCS3A01G390100.1	Wheat	plasma membrane, plastid	77.23	77.23
TraesCS3B01G418700.1	Wheat	mitochondrion	76.98	76.98
Os01t0876100-00	Rice	plasma membrane	77.23	70.41
VIT_12s0035g01720.t01	Wine grape	plasma membrane	68.05	69.63
EES12223	Sorghum	plasma membrane	69.81	69.55
PGSC0003DMT400064087	Potato	plasma membrane	66.92	68.65
Solyc10g044470.1.1	Tomato	plasma membrane	65.91	68.59
Solyc01g103140.2.1	Tomato	plasma membrane	66.79	68.52
VIT_07s0130g00400.t01	Wine grape	cytosol	66.79	68.08
OQU85125	Sorghum	plasma membrane	69.56	67.85
PGSC0003DMT400025239	Potato	plasma membrane	66.16	67.78
Bra000596.1-P	Field mustard	plasma membrane	65.28	66.97
CDY21447	Canola	plasma membrane	65.16	66.84
CDX83179	Canola	plasma membrane	65.16	66.84
CDY16376	Canola	plasma membrane	65.03	66.71
CDX91539	Canola	plasma membrane	65.03	66.71
Bra022507.1-P	Field mustard	plasma membrane	65.03	66.71
AT5G49890.1	Thale cress	plasma membrane	65.16	66.5
KRH38787	Soybean	cytosol	63.52	64.01
KRH09287	Soybean	cytosol, nucleus, plasma membrane	63.77	63.69
EES11540	Sorghum	plasma membrane	56.1	54.79
EES06435	Sorghum	plasma membrane	54.21	54.35
EER90148	Sorghum	plasma membrane	49.69	49.31
KXG37802	Sorghum	plasma membrane	44.15	43.98

Protein Annotations

MapMan:24.2.16	Gene3D:3.10.580.10	EntrezGene:8061005	UniProt:C5XRC6	InterPro:CBS_dom	InterPro:Cl-channel_core
InterPro:Cl-channel_volt-gated	InterPro:Cl_channel_pln	EnsemblPlants:EES01847	ProteinID:EES01847	ProteinID:EES01847.1	GO:GO:0003674
GO:GO:0005215	GO:GO:0005216	GO:GO:0005247	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0006810	GO:GO:0006811	GO:GO:0006821
GO:GO:0008150	GO:GO:0009705	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	GO:GO:1902476
InterPro:IPR000644	InterPro:IPR014743	PFAM:PF00571	PFAM:PF00654	PRINTS:PR00762	PRINTS:PR01120
PFscan:PS51371	PANTHER:PTHR11689	PANTHER:PTHR11689:SF84	EnsemblPlantsGene:SORBI_3003G374400	SUPFAM:SSF54631	SUPFAM:SSF81340
TMHMM:TMhelix	UniParc:UPI0001A84FAD	RefSeq:XP_002456727.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:+:68949134..68954992

Molecular Weight (calculated)

85089.5 Da

IEP (calculated)

8.085

GRAVY (calculated)

0.466

Length

795 amino acids

Sequence
(BLAST)

001: MAPTNGKETG LDGAESSCTT PLATPAATPI ATPMSTRSVK WEKDIEDAAG ALHRPLLYHG TNTTSQMAIV GANTCPIESL DYEIVENEVY NQDWRSRGKL
101: QIFQYQVLKW VLALFVGVVV GLAGFFSNIA VENIAGFKLL LTGDLMLENR YLAAFVLYIG CNAILATAAA ALCAYIAPAA AGSGIPEVKA YLNGVDAHSI
201: LAPSTLLVKI LGSILGVSAG FVLGKEGPMV HTGACVASLL AQGGSRKYGL TWNWIRYFKN DLDRRDLITC GAAAGVAAAF RAPVGGVLFA LEEVTSWWRS
301: ALLWRTFSTT AVVTMVLHAL ITYCRGGHCG LFGKGGLIMF DLGSRQVTYT VTDLAVVMLL GVLGGLLGAL FNFLVDRVLR VYSLVNAKGA CYKIVLTVTI
401: SVITSCCTFG LPWLTTCTPC PPELAKTKCP TIGRSGNFKN FQCPPGHYNA LASLFFNTND DAIRNLLSAG RYDYREFGVS TLLTFFTTVY TLGLLTYGVA
501: VPSGLFIPVI LAGASFGRLV STLLGSVSGL DSGLFALLGA ASFLGGTMRM TVSVCVILLE LTNDLLLLPL IMLVLLISKT VADCFNKGVY EQIVRMKGLP
601: YLEVHASACT RSLVAGDVVS GPLVTFSSVE RVGAVVETLK CTGHNGFPVI EDPPLAPAPE LCGLVLRSHL LVLLQGRIFT GARVKTGAAE VFRTLAPFDF
701: AKAGSGKGLK VEDLELTEEE MDMYVDLHPI TNRSPYTVVE TMSLAKAASL FRGLGLRHMC VVPRTQGRPP VVGILTRHDF MPQYIRGLYP NVLPH

Best Arabidopsis Sequence Match ( AT5G49890.1 )
(BLAST)

001: MDDRHEGDHH DIEVEGGALH GFERKISGIL DDGSVGFRQP LLARNRKNTT SQIAIVGANT CPIESLDYEI FENDFFKQDW RSRKKIEILQ YTFLKWALAF
101: LIGLATGLVG FLNNLGVENI AGFKLLLIGN LMLKEKYFQA FFAFAGCNLI LATAAASLCA FIAPAAAGSG IPEVKAYLNG IDAYSILAPS TLFVKIFGSI
201: FGVAAGFVVG KEGPMVHTGA CIANLLGQGG SKKYRLTWKW LRFFKNDRDR RDLITCGAAA GVAAAFRAPV GGVLFALEEA ASWWRNALLW RTFFTTAVVA
301: VVLRSLIEFC RSGRCGLFGK GGLIMFDVNS GPVLYSTPDL LAIVFLGVIG GVLGSLYNYL VDKVLRTYSI INEKGPRFKI MLVMAVSILS SCCAFGLPWL
401: SQCTPCPIGI EEGKCPSVGR SSIYKSFQCP PNHYNDLSSL LLNTNDDAIR NLFTSRSENE FHISTLAIFF VAVYCLGIIT YGIAIPSGLF IPVILAGASY
501: GRLVGRLLGP VSQLDVGLFS LLGAASFLGG TMRMTVSLCV ILLELTNNLL MLPLVMLVLL ISKTVADCFN RGVYDQIVTM KGLPYMEDHA EPYMRNLVAK
601: DVVSGALISF SRVEKVGVIW QALKMTRHNG FPVIDEPPFT EASELCGIAL RSHLLVLLQG KKFSKQRTTF GSQILRSCKA RDFGKAGLGK GLKIEDLDLS
701: EEEMEMYVDL HPITNTSPYT VLETLSLAKA AILFRQLGLR HLCVVPKTPG RPPIVGILTR HDFMPEHVLG LYPHIDPLK

Arabidopsis Description

CLC-CChloride channel protein CLC-c [Source:UniProtKB/Swiss-Prot;Acc:Q96282]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.