Factsheet for VIT_12s0035g01720.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, peroxisome, secretory
BaCelLo:	cytosol
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064087	Potato	plasma membrane	77.61	77.81
Solyc10g044470.1.1	Tomato	plasma membrane	76.06	77.36
Solyc01g103140.2.1	Tomato	plasma membrane	77.09	77.29
VIT_07s0130g00400.t01	Wine grape	cytosol	77.22	76.92
PGSC0003DMT400025239	Potato	plasma membrane	76.71	76.8
Bra022507.1-P	Field mustard	plasma membrane	75.93	76.13
CDY16376	Canola	plasma membrane	75.93	76.13
Bra000596.1-P	Field mustard	plasma membrane	75.8	76.0
CDX91539	Canola	plasma membrane	75.8	76.0
CDY21447	Canola	plasma membrane	75.68	75.87
CDX83179	Canola	plasma membrane	75.68	75.87
AT5G49890.1	Thale cress	plasma membrane	76.06	75.87
EES01847	Sorghum	cytosol, peroxisome, plasma membrane	69.63	68.05
Zm00001d042651_P001	Maize	plasma membrane	68.98	67.51
HORVU3Hr1G081920.1	Barley	plasma membrane, plastid	66.15	65.06
TraesCS3B01G418700.1	Wheat	mitochondrion	66.15	64.65
TraesCS3D01G379600.1	Wheat	plasma membrane, plastid	66.02	64.61
TraesCS3A01G390100.1	Wheat	plasma membrane, plastid	65.38	63.9
VIT_11s0118g00220.t01	Wine grape	plasma membrane	61.65	62.05
Os01t0876100-00	Rice	plasma membrane	68.34	60.89
VIT_14s0068g02190.t01	Wine grape	plasma membrane	54.31	53.49
VIT_05s0020g03090.t01	Wine grape	plasma membrane	44.66	43.38
VIT_00s0316g00020.t01	Wine grape	cytosol	3.99	36.9
VIT_14s0068g02330.t01	Wine grape	cytosol, extracellular	3.86	36.59

Protein Annotations

EntrezGene:100245380	wikigene:100245380	MapMan:24.2.16	Gene3D:3.10.580.10	ProteinID:ADK66979	ProteinID:ADK66979.1
InterPro:CBS_dom	ProteinID:CCB55009	ProteinID:CCB55009.1	InterPro:Cl-channel_core	InterPro:Cl-channel_volt-gated	InterPro:Cl_channel_pln
UniProt:F6HK06	EMBL:FN595990	GO:GO:0003674	GO:GO:0005215	GO:GO:0005216	GO:GO:0005247
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774
GO:GO:0006810	GO:GO:0006811	GO:GO:0006821	GO:GO:0008150	GO:GO:0009705	GO:GO:0016020
GO:GO:0016021	GO:GO:0034220	GO:GO:0055085	GO:GO:1902476	EMBL:HM369799	InterPro:IPR000644
InterPro:IPR014743	EntrezGene:LOC100245380	wikigene:LOC100245380	PFAM:PF00571	PFAM:PF00654	PRINTS:PR00762
PRINTS:PR01120	PFscan:PS51371	PANTHER:PTHR11689	PANTHER:PTHR11689:SF105	SMART:SM00116	SUPFAM:SSF54631
SUPFAM:SSF81340	TMHMM:TMhelix	UniParc:UPI00015CB319	ArrayExpress:VIT_12s0035g01720	EnsemblPlantsGene:VIT_12s0035g01720	EnsemblPlants:VIT_12s0035g01720.t01
unigene:Vvi.26394	RefSeq:XP_010657885.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr12:+:21812606..21820136

Molecular Weight (calculated)

84913.2 Da

IEP (calculated)

7.860

GRAVY (calculated)

0.346

Length

777 amino acids

Sequence
(BLAST)

001: MDQRDGENDI EIEGVWGDWR EMEGNGSDFS DKDTAMREPL LVRKRLNSTS QIAIVGASVC PIESLDYEIV ENELFKQDWR SRKRVQIFQY IVLKWTLALL
101: IGLGTGLVGF FNNLAVENIA GFKLLLASNL MLKDKYGLAF VTFAGCNMVL AIAAAVLCAY IAPSAAGSGI PEVKAYLNGI DAHSILAPST LFVKIFGSIL
201: GVSAGFVVGK EGPMVHTGAC IASLLGQGGS RKYHLTWKWL RYFKNDRDRR DLITCGAAAG VAAAFRAPVG GVLFALEEVT SWWRSALLWR TFFTTAVVAV
301: VLRALIEFCR SGKCGLFGQG GLIMFDVNSS QATYDTPDLL TVIFLGIVGG IFGSLYNFLV DKVLRTYSIF NEQGPKFRVL LVIVISLLTS CCAYGIPWLA
401: QCKPCPIELK NECPTVGRSG NYKNFQCQPG HYNDLASLFL NTNDDAIRNL FSNGTQNEFQ LSTLVIFFAA VYCLGIITYG IAVPSGLFIP VILAGASYGR
501: IVGTVAGSLT SLDVGLFSLL GAASFLGGTM RMTVSLCIIL LELTNDLLML PLMMLVLLIS KTVADCFNKG VYDQIVRMKG FPYMEAHAEP YMRHLVAKDV
601: VSGPLITFSS IEKVGNILHA LKTTGHHGFP VIDEPPFTDA PELCGLVLKS HLLVLLKGKK FSKTRMLVGS EILKTFEAND FAKAGSGKGV KLEDLDITAE
701: EMEMYVDLHP ITNTSPYTVV ETMSLAKAAV LFRELGLRHL CVVPKTHARP PIVGILTRHD FMPGHIRGLY PHFNSSK

Best Arabidopsis Sequence Match ( AT5G49890.1 )
(BLAST)

001: MDDRHEGDHH DIEVEGGALH GFERKISGIL DDGSVGFRQP LLARNRKNTT SQIAIVGANT CPIESLDYEI FENDFFKQDW RSRKKIEILQ YTFLKWALAF
101: LIGLATGLVG FLNNLGVENI AGFKLLLIGN LMLKEKYFQA FFAFAGCNLI LATAAASLCA FIAPAAAGSG IPEVKAYLNG IDAYSILAPS TLFVKIFGSI
201: FGVAAGFVVG KEGPMVHTGA CIANLLGQGG SKKYRLTWKW LRFFKNDRDR RDLITCGAAA GVAAAFRAPV GGVLFALEEA ASWWRNALLW RTFFTTAVVA
301: VVLRSLIEFC RSGRCGLFGK GGLIMFDVNS GPVLYSTPDL LAIVFLGVIG GVLGSLYNYL VDKVLRTYSI INEKGPRFKI MLVMAVSILS SCCAFGLPWL
401: SQCTPCPIGI EEGKCPSVGR SSIYKSFQCP PNHYNDLSSL LLNTNDDAIR NLFTSRSENE FHISTLAIFF VAVYCLGIIT YGIAIPSGLF IPVILAGASY
501: GRLVGRLLGP VSQLDVGLFS LLGAASFLGG TMRMTVSLCV ILLELTNNLL MLPLVMLVLL ISKTVADCFN RGVYDQIVTM KGLPYMEDHA EPYMRNLVAK
601: DVVSGALISF SRVEKVGVIW QALKMTRHNG FPVIDEPPFT EASELCGIAL RSHLLVLLQG KKFSKQRTTF GSQILRSCKA RDFGKAGLGK GLKIEDLDLS
701: EEEMEMYVDL HPITNTSPYT VLETLSLAKA AILFRQLGLR HLCVVPKTPG RPPIVGILTR HDFMPEHVLG LYPHIDPLK

Arabidopsis Description

CLC-CChloride channel protein CLC-c [Source:UniProtKB/Swiss-Prot;Acc:Q96282]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.