CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16376	Canola	plasma membrane	99.61	99.61
CDX83179	Canola	plasma membrane	97.29	97.29
CDY21447	Canola	plasma membrane	97.29	97.29
AT5G49890.1	Thale cress	plasma membrane	94.06	93.58
Solyc10g044470.1.1	Tomato	plasma membrane	76.13	77.23
PGSC0003DMT400025239	Potato	plasma membrane	77.03	76.93
VIT_12s0035g01720.t01	Wine grape	plasma membrane	76.0	75.8
PGSC0003DMT400064087	Potato	plasma membrane	75.48	75.48
Solyc01g103140.2.1	Tomato	plasma membrane	75.1	75.1
EES01847	Sorghum	cytosol, peroxisome, plasma membrane	66.71	65.03
Zm00001d042651_P001	Maize	plasma membrane	66.06	64.48
TraesCS3B01G418700.1	Wheat	mitochondrion	63.61	62.01
HORVU3Hr1G081920.1	Barley	plasma membrane, plastid	63.1	61.9
TraesCS3D01G379600.1	Wheat	plasma membrane, plastid	63.1	61.59
TraesCS3A01G390100.1	Wheat	plasma membrane, plastid	63.1	61.51
Os01t0876100-00	Rice	plasma membrane	65.94	58.6
CDY47559	Canola	plasma membrane	57.16	57.98
CDY12393	Canola	plasma membrane	56.65	57.46
CDX67478	Canola	plasma membrane	51.61	51.95
CDY34173	Canola	plasma membrane	52.26	51.92
CDX83663	Canola	plasma membrane	52.39	51.85
CDY13685	Canola	plasma membrane	52.26	51.72
CDY11722	Canola	plasma membrane	51.35	51.69
CDY28488	Canola	plasma membrane	52.0	51.47
CDY15925	Canola	plasma membrane	50.84	50.77
CDX99630	Canola	plasma membrane	50.58	50.52
CDX88226	Canola	plasma membrane	44.65	43.69
CDY52633	Canola	plasma membrane	44.77	43.27

Protein Annotations

MapMan:24.2.16	Gene3D:3.10.580.10	GO:A0A078DSV2	InterPro:CBS_dom	EnsemblPlants:CDX91539	ProteinID:CDX91539
ProteinID:CDX91539.1	InterPro:Cl-channel_core	InterPro:Cl-channel_volt-gated	InterPro:Cl_channel_pln	GO:GO:0003674	GO:GO:0005215
GO:GO:0005216	GO:GO:0005247	GO:GO:0005575	GO:GO:0006810	GO:GO:0006811	GO:GO:0006821
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0034220	GO:GO:0055085	GO:GO:1902476
EnsemblPlantsGene:GSBRNA2T00152921001	InterPro:IPR000644	InterPro:IPR014743	PFAM:PF00571	PFAM:PF00654	PRINTS:PR00762
PRINTS:PR01120	PFscan:PS51371	PANTHER:PTHR11689	PANTHER:PTHR11689:SF105	SUPFAM:SSF54631	SUPFAM:SSF81340
TMHMM:TMhelix	UniParc:UPI0004EB953A	SEG:seg	:	:	:

Description

BnaC02g16210D

Coordinates

chrLK031868:-:203544..207078

Molecular Weight (calculated)

84335.9 Da

IEP (calculated)

8.304

GRAVY (calculated)

0.396

Length

775 amino acids

Sequence
(BLAST)

001: MDDRSDDHDI EVEGGIHAYE RKISGILDDG SVGFQQPLLA RNRKNTTSQI AIVGANTCPI ESLDYEIFEN DLFKQDWRSR KKIEILQYTI LKWALAFLIG
101: LATGLVGFLN NLAVENIAGF KLLLTGNLML KEKYFQAFFA FAGCNLILAT AAGSLCAFIA PAAAGSGIPE VKAYLNGIDA YSILAPSTLF VKIFGSIFGV
201: AAGFVVGKEG PMVHTGACIA NLLGQGGSRK YKLTWKWLRF FKNDRDRRDL ITCGAAAGVA AAFRAPVGGV LFALEEAASW WRSALLWRTF FTTAVVAVVL
301: RTLIELCRSG KCGLFGKGGL IMFDVNSGPV LYSTPDLLAV VFLGVVGGVL GGLYNYLVDI VLRTYALINE RGPGFKVMLV MAVSILSSCC AFGLPWISQC
401: TPCPIGSEGK CPSVGRSGIY KSFQCPPNHY NDLSSLLLNT NDDAIRSLFT SRSENEFQIS TLAMFFVFVY CLGIITYGIA IPSGLFIPVI LAGASYGRLV
501: GRLLGPVSQL DVGLFSLLGA ASFLGGTMRM TVSLCVILLE LTNNLLMLPL VMLVLLISKT VADCFNKGVY DQIVTMKGLP YMEDHAEPYM RNLVAKDVVA
601: GPLLSFSRVE KVGVIWQALK MTSHNGFPVI DEPPFTEASE LCGIALRSHL LVLLQGKRFS KQKTTFGSQI LRSCKARDFA KAGLGKGLKI DDLVISDEEM
701: EMYVDLHPIT NTSPYTVLET LSLAKAAILF RQLGLRHLCV VPKTPGRPPI VGILTRHDFM PEHVLGLYPH IDPLK

Best Arabidopsis Sequence Match ( AT5G49890.1 )
(BLAST)

001: MDDRHEGDHH DIEVEGGALH GFERKISGIL DDGSVGFRQP LLARNRKNTT SQIAIVGANT CPIESLDYEI FENDFFKQDW RSRKKIEILQ YTFLKWALAF
101: LIGLATGLVG FLNNLGVENI AGFKLLLIGN LMLKEKYFQA FFAFAGCNLI LATAAASLCA FIAPAAAGSG IPEVKAYLNG IDAYSILAPS TLFVKIFGSI
201: FGVAAGFVVG KEGPMVHTGA CIANLLGQGG SKKYRLTWKW LRFFKNDRDR RDLITCGAAA GVAAAFRAPV GGVLFALEEA ASWWRNALLW RTFFTTAVVA
301: VVLRSLIEFC RSGRCGLFGK GGLIMFDVNS GPVLYSTPDL LAIVFLGVIG GVLGSLYNYL VDKVLRTYSI INEKGPRFKI MLVMAVSILS SCCAFGLPWL
401: SQCTPCPIGI EEGKCPSVGR SSIYKSFQCP PNHYNDLSSL LLNTNDDAIR NLFTSRSENE FHISTLAIFF VAVYCLGIIT YGIAIPSGLF IPVILAGASY
501: GRLVGRLLGP VSQLDVGLFS LLGAASFLGG TMRMTVSLCV ILLELTNNLL MLPLVMLVLL ISKTVADCFN RGVYDQIVTM KGLPYMEDHA EPYMRNLVAK
601: DVVSGALISF SRVEKVGVIW QALKMTRHNG FPVIDEPPFT EASELCGIAL RSHLLVLLQG KKFSKQRTTF GSQILRSCKA RDFGKAGLGK GLKIEDLDLS
701: EEEMEMYVDL HPITNTSPYT VLETLSLAKA AILFRQLGLR HLCVVPKTPG RPPIVGILTR HDFMPEHVLG LYPHIDPLK

Arabidopsis Description

CLC-CChloride channel protein CLC-c [Source:UniProtKB/Swiss-Prot;Acc:Q96282]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.