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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plasma membrane 4
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX78905
CDX84933
CDX97739
CDX98596
CDX99411
CDY01565
CDY03907
CDY15722
CDY27605
CDY30157

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G40890.1 CDX84933 AT1G27300.1 21798944
AT5G40890.1 CDY03907 AT1G27300.1 21798944
AT5G40890.1 CDY15722 AT1G27300.1 21798944
AT5G40890.1 CDY27605 AT1G27300.1 21798944
AT5G40890.1 CDX97739 AT3G16310.1 21798944
AT5G40890.1 CDY30157 AT3G16310.1 21798944
AT5G40890.1 CDX78905 AT4G19030.1 21798944
AT5G40890.1 CDX98596 AT4G19030.1 21798944
AT5G40890.1 CDX99411 AT4G19030.1 21798944
AT5G40890.1 CDY01565 AT4G19030.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra030328.1-P Field mustard plasma membrane 99.1 99.1
CDY15925 Canola plasma membrane 98.97 98.97
CDX67478 Canola plasma membrane 95.88 96.62
CDY11722 Canola plasma membrane 95.88 96.62
AT5G40890.1 Thale cress plasma membrane 94.33 94.45
CDY13685 Canola plasma membrane 86.21 85.44
CDX83663 Canola plasma membrane 85.95 85.19
CDY34173 Canola plasma membrane 85.18 84.74
CDY28488 Canola plasma membrane 85.31 84.55
VIT_14s0068g02190.t01 Wine grape plasma membrane 80.15 78.83
KRG94508 Soybean plasma membrane 80.03 78.61
KRH06955 Soybean plasma membrane 75.13 78.25
KRH57669 Soybean plasma membrane 77.96 77.86
Solyc02g068080.2.1 Tomato peroxisome, plasma membrane, vacuole 77.45 76.66
PGSC0003DMT400017962 Potato peroxisome, plasma membrane, vacuole 77.19 76.4
Solyc02g094060.2.1 Tomato plasma membrane 69.33 70.51
PGSC0003DMT400052072 Potato plasma membrane 70.1 70.28
GSMUA_Achr3P16100_001 Banana plasma membrane 65.59 70.21
TraesCS6A01G098600.1 Wheat plasma membrane 67.27 67.1
TraesCS6B01G126400.1 Wheat plasma membrane 67.53 66.58
TraesCS6D01G084300.1 Wheat cytosol, nucleus, plasma membrane 67.4 66.45
TraesCS6B01G126800.1 Wheat plasma membrane 66.88 66.2
TraesCS6D01G084000.2 Wheat plasma membrane 66.75 66.07
EER90148 Sorghum plasma membrane 67.4 65.29
Zm00001d046919_P001 Maize plasma membrane 67.4 65.29
TraesCS6A01G098500.2 Wheat cytosol, peroxisome, plasma membrane 65.72 64.07
HORVU0Hr1G015220.3 Barley cytosol 28.87 54.5
CDY12393 Canola plasma membrane 52.45 53.27
CDY47559 Canola plasma membrane 52.32 53.14
CDY16376 Canola plasma membrane 50.64 50.71
CDY21447 Canola plasma membrane 50.64 50.71
CDX91539 Canola plasma membrane 50.52 50.58
CDX83179 Canola plasma membrane 50.52 50.58
Os12t0438600-01 Rice plasma membrane 9.41 48.03
CDX88226 Canola plasma membrane 42.14 41.29
CDY52633 Canola plasma membrane 42.27 40.9
Protein Annotations
MapMan:24.2.16Gene3D:3.10.580.10GO:A0A078EC33InterPro:CBS_domEnsemblPlants:CDX99630ProteinID:CDX99630
ProteinID:CDX99630.1InterPro:Cl-channel_coreInterPro:Cl-channel_volt-gatedInterPro:Cl_channel_plnncoils:CoilGO:GO:0003674
GO:GO:0005215GO:GO:0005216GO:GO:0005247GO:GO:0005575GO:GO:0006810GO:GO:0006811
GO:GO:0006821GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0034220GO:GO:0055085
GO:GO:1902476EnsemblPlantsGene:GSBRNA2T00108138001InterPro:IPR000644InterPro:IPR014743PFAM:PF00571PFAM:PF00654
PRINTS:PR00762PRINTS:PR01120PFscan:PS51371PANTHER:PTHR11689PANTHER:PTHR11689:SF67SMART:SM00116
SUPFAM:SSF54631SUPFAM:SSF81340TMHMM:TMhelixUniParc:UPI0004EF0337SEG:seg:
Description
BnaC04g33870D
Coordinates
chrLK031912:+:477237..482407
Molecular Weight (calculated)
85368.5 Da
IEP (calculated)
7.996
GRAVY (calculated)
0.264
Length
776 amino acids
Sequence
(BLAST)
001: MAEDGNLHIG NSNYNGEEEA DPENNTMNQP LLKRHRTLSS TPLALVGTKV SHIESLDYEI NENDLFKHDW RSRSKAQVFQ YIFAKWTLAC LVGLLTGLIA
101: TLINLAVENI AGYKLLAVGY YIAQDRYLTG LLIFTGANLG LTLVATILVV VFAPTAAGPG IPEIKAYLNG VDTPNMFGAT TMIVKIVGSI GAVAAGLDLG
201: KEGPLVHIGS CIASLLGQGG PDNHRIKWRW LRYFNNDRDR RDLITCGSAS GVCAAFRSPV GGVLFALEEV ATWWRSALLW RTFFSTAVVV VVLRAFIEIC
301: NSGKCGLFGK GGLIMFDVSH VEVRYHAVDI IPVTLIGVFG GILGSLYNNL LHKVLRLYNL INQKGKIHKV LLSLSVSLFT SVCLYGLPFL AECKPCNPSI
401: DEACPTNGRS GNFKQFNCPN GYYNDLATLF LTTNDDAVRN VFSSNTPNEF GMVSLWIYFG LYCILGLITF GIATPSGLFL PIILMGSAYG RMLGTVMGSY
501: TKIDQGLYAV LGAASLMAGS MRMTVSLCVI FLELTNNLLL LPITMFVLLI AKTVGDSFNL SIYEIILHLK GLPFLEANPE PWMRNLTVGE LVDAKPPVIT
601: LRGVEKVANI VDALRNTTHN AFPVLDGEDV DTGAGTELHG LILRAHIVKV LKKRWFLNEK RRTEEWEVRE KFTPVELAER EDNFDDVAIT SSEMQMWVDL
701: HPLTNTTPYT VVQSMSVAKA LVLFRSVGLR HLLVVPKIQA SGMSPVIGIL TRQDLRAYNI LQAFPRLDKH KSGKLR
Best Arabidopsis Sequence Match ( AT5G40890.1 )
(BLAST)
001: MDEDGNLQIS NSNYNGEEEG EDPENNTLNQ PLLKRHRTLS STPLALVGAK VSHIESLDYE INENDLFKHD WRSRSKAQVF QYIFLKWTLA CLVGLFTGLI
101: ATLINLAVEN IAGYKLLAVG YYIAQDRFWT GLMVFTGANL GLTLVATVLV VYFAPTAAGP GIPEIKAYLN GIDTPNMFGF TTMMVKIVGS IGAVAAGLDL
201: GKEGPLVHIG SCIASLLGQG GPDNHRIKWR WLRYFNNDRD RRDLITCGSA SGVCAAFRSP VGGVLFALEE VATWWRSALL WRTFFSTAVV VVVLRAFIEI
301: CNSGKCGLFG SGGLIMFDVS HVEVRYHAAD IIPVTLIGVF GGILGSLYNH LLHKVLRLYN LINQKGKIHK VLLSLGVSLF TSVCLFGLPF LAECKPCDPS
401: IDEICPTNGR SGNFKQFNCP NGYYNDLSTL LLTTNDDAVR NIFSSNTPNE FGMVSLWIFF GLYCILGLIT FGIATPSGLF LPIILMGSAY GRMLGTAMGS
501: YTNIDQGLYA VLGAASLMAG SMRMTVSLCV IFLELTNNLL LLPITMFVLL IAKTVGDSFN LSIYEIILHL KGLPFLEANP EPWMRNLTVG ELNDAKPPVV
601: TLNGVEKVAN IVDVLRNTTH NAFPVLDGAD QNTGTELHGL ILRAHLVKVL KKRWFLNEKR RTEEWEVREK FTPVELAERE DNFDDVAITS SEMQLYVDLH
701: PLTNTTPYTV VQSMSVAKAL VLFRSVGLRH LLVVPKIQAS GMSPVIGILT RQDLRAYNIL QAFPHLDKHK SGKAR
Arabidopsis Description
CLC-AChloride channel protein CLC-a [Source:UniProtKB/Swiss-Prot;Acc:P92941]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.