Factsheet for Solyc02g094060.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
plasma membrane 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g071920.2.1
Solyc03g005980.2.1
Solyc03g120880.2.1
Solyc05g015640.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40890.1	Solyc05g015640.2.1	AT1G27300.1	21798944
AT5G40890.1	Solyc03g120880.2.1	AT3G16310.1	21798944
AT5G40890.1	Solyc02g071920.2.1	AT4G19030.1	21798944
AT5G40890.1	Solyc03g005980.2.1	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400052072	Potato	plasma membrane	96.99	95.61
Solyc02g068080.2.1	Tomato	peroxisome, plasma membrane, vacuole	81.39	79.21
VIT_14s0068g02190.t01	Wine grape	plasma membrane	75.88	73.38
KRH57669	Soybean	plasma membrane	73.53	72.2
KRG94508	Soybean	plasma membrane	74.71	72.15
KRH06955	Soybean	plasma membrane	69.59	71.28
Bra028478.1-P	Field mustard	plasma membrane	71.43	70.78
CDX67478	Canola	plasma membrane	71.43	70.78
CDY11722	Canola	plasma membrane	71.43	70.78
AT5G40890.1	Thale cress	plasma membrane	71.17	70.06
Bra030328.1-P	Field mustard	plasma membrane	71.04	69.85
CDY15925	Canola	plasma membrane	70.9	69.72
AT3G27170.1	Thale cress	plasma membrane	71.17	69.62
CDX83663	Canola	plasma membrane	71.17	69.35
CDX99630	Canola	plasma membrane	70.51	69.33
CDY34173	Canola	plasma membrane	70.77	69.23
Bra025253.1-P	Field mustard	plasma membrane	70.9	69.09
CDY13685	Canola	plasma membrane	70.77	68.97
Bra032985.1-P	Field mustard	plasma membrane	70.64	68.84
CDY28488	Canola	plasma membrane	70.64	68.84
GSMUA_Achr3P16100_001	Banana	plasma membrane	64.09	67.45
VIT_14s0068g02330.t01	Wine grape	cytosol, extracellular	6.82	63.41
TraesCS6B01G126800.1	Wheat	plasma membrane	64.22	62.5
TraesCS6D01G084300.1	Wheat	cytosol, nucleus, plasma membrane	64.35	62.39
TraesCS6B01G126400.1	Wheat	plasma membrane	64.35	62.39
TraesCS6D01G084000.2	Wheat	plasma membrane	63.96	62.24
TraesCS6A01G098600.1	Wheat	plasma membrane	63.3	62.08
Zm00001d046919_P001	Maize	plasma membrane	65.14	62.05
EER90148	Sorghum	plasma membrane	65.14	62.05
TraesCS6A01G098500.2	Wheat	cytosol, peroxisome, plasma membrane	62.25	59.67
VIT_00s0316g00020.t01	Wine grape	cytosol	6.55	59.52
Solyc10g044470.1.1	Tomato	plasma membrane	51.77	51.7
HORVU0Hr1G015220.3	Barley	cytosol	27.52	51.09
Solyc01g103140.2.1	Tomato	plasma membrane	51.51	50.71
Solyc07g007690.2.1	Tomato	plasma membrane	50.72	49.11
Os12t0438600-01	Rice	plasma membrane	8.52	42.76
Solyc09g075800.2.1	Tomato	plasma membrane	41.55	39.97

Protein Annotations

MapMan:24.2.16	Gene3D:3.10.580.10	InterPro:CBS_dom	InterPro:Cl-channel_core	InterPro:Cl-channel_volt-gated	InterPro:Cl_channel_pln
GO:GO:0003674	GO:GO:0005215	GO:GO:0005216	GO:GO:0005247	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0006810	GO:GO:0006811	GO:GO:0006821
GO:GO:0008150	GO:GO:0009671	GO:GO:0009705	GO:GO:0015706	GO:GO:0016020	GO:GO:0016021
GO:GO:0055085	GO:GO:1902476	GO:GO:1902600	InterPro:IPR000644	InterPro:IPR014743	UniProt:K4BDK2
PFAM:PF00654	PRINTS:PR00762	PRINTS:PR01120	PFscan:PS51371	PANTHER:PTHR11689	PANTHER:PTHR11689:SF67
SMART:SM00116	SUPFAM:SSF54631	SUPFAM:SSF81340	EnsemblPlantsGene:Solyc02g094060.2	EnsemblPlants:Solyc02g094060.2.1	TMHMM:TMhelix
UniParc:UPI00027688D9	SEG:seg	:	:	:	:

Description

Chloride channel protein [Source:UniProtKB/TrEMBL;Acc:K4BDK2]

Coordinates

chr2:-:54691660..54696643

Molecular Weight (calculated)

84903.5 Da

IEP (calculated)

7.690

GRAVY (calculated)

0.353

Length

763 amino acids

Sequence
(BLAST)

001: MEEPNGFATI NDMEEEREST DINYSRNRTL SSTSVALEGA KVSHIESLDY EINENDLFKH DWRKRSRVQT LQYVFIKWTL AFLVGLFTGG VATLISLSIE
101: NISGYKLRAT VNYIDDKRYF MGFAFFAGAN FLLTLLAAFI TVYFAPTAAG PGVPEIKAYL NGVDTPNMFG ATTLFVKIIG SIGAVSAGLD LGKEEPLIHI
201: GSCIASLLGQ GGSDSYKLSW HWLRYFNNDR DKRDLITYGS SSGVCAAFRA PVAGVLFALE EVATWWRSAL IWRTFFSTAV VVVVLRIFMD YCKSGSCGLF
301: GRGGLIMFDV SDVIVRYHIV DIIPVVIIGV IGGLLGSLYN HVLHKVLRLY NLVNEKGKLH KLLLALSVSL FTSICIYGLP FLAKCKPCDS SLSDSCPGTG
401: ETENFKQFNC PNGYYNDLAT LLLATKEDAI RKIFSLNTGT EFQVISLLIF FLLYCILGVI TFGIAVPSGL YIPIILMGSG YGRLLGIAMR PYTKIDQELF
501: AVLGAASLMA GSMRMTVTVC VIFLELTNNL LLLPITMLVL LIAKIVADCF NPSIYEMVLE LKGLPFLEAH PEAWMRNIIV GELSDVKSPV VTLEGIEKVR
601: RIVEVLKYTT HNGFPVVDGV IPELHGLVLR THLLLVLKKK WFLNERRRTE NWEVEEKFTW IDLAERWGKI EDIAVTKDEM EMYVDLHPLI NTTPHTVVES
701: LSVAKAMVAF RQVGLRHMII VPKYQAAGVF PVVGILTRQD LRACNILNVI PHLAKSKSIK KGN

Best Arabidopsis Sequence Match ( AT5G40890.1 )
(BLAST)

001: MDEDGNLQIS NSNYNGEEEG EDPENNTLNQ PLLKRHRTLS STPLALVGAK VSHIESLDYE INENDLFKHD WRSRSKAQVF QYIFLKWTLA CLVGLFTGLI
101: ATLINLAVEN IAGYKLLAVG YYIAQDRFWT GLMVFTGANL GLTLVATVLV VYFAPTAAGP GIPEIKAYLN GIDTPNMFGF TTMMVKIVGS IGAVAAGLDL
201: GKEGPLVHIG SCIASLLGQG GPDNHRIKWR WLRYFNNDRD RRDLITCGSA SGVCAAFRSP VGGVLFALEE VATWWRSALL WRTFFSTAVV VVVLRAFIEI
301: CNSGKCGLFG SGGLIMFDVS HVEVRYHAAD IIPVTLIGVF GGILGSLYNH LLHKVLRLYN LINQKGKIHK VLLSLGVSLF TSVCLFGLPF LAECKPCDPS
401: IDEICPTNGR SGNFKQFNCP NGYYNDLSTL LLTTNDDAVR NIFSSNTPNE FGMVSLWIFF GLYCILGLIT FGIATPSGLF LPIILMGSAY GRMLGTAMGS
501: YTNIDQGLYA VLGAASLMAG SMRMTVSLCV IFLELTNNLL LLPITMFVLL IAKTVGDSFN LSIYEIILHL KGLPFLEANP EPWMRNLTVG ELNDAKPPVV
601: TLNGVEKVAN IVDVLRNTTH NAFPVLDGAD QNTGTELHGL ILRAHLVKVL KKRWFLNEKR RTEEWEVREK FTPVELAERE DNFDDVAITS SEMQLYVDLH
701: PLTNTTPYTV VQSMSVAKAL VLFRSVGLRH LLVVPKIQAS GMSPVIGILT RQDLRAYNIL QAFPHLDKHK SGKAR

Arabidopsis Description

CLC-AChloride channel protein CLC-a [Source:UniProtKB/Swiss-Prot;Acc:P92941]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.