Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G126800.1 | Wheat | plasma membrane | 98.34 | 98.34 |
| TraesCS6A01G098600.1 | Wheat | plasma membrane | 96.43 | 97.17 |
| TraesCS6D01G084300.1 | Wheat | cytosol, nucleus, plasma membrane | 95.28 | 94.92 |
| EER90148 | Sorghum | plasma membrane | 85.97 | 84.14 |
| Zm00001d046919_P001 | Maize | plasma membrane | 85.33 | 83.52 |
| Os12t0438600-01 | Rice | plasma membrane | 14.29 | 73.68 |
| GSMUA_Achr3P16100_001 | Banana | plasma membrane | 68.11 | 73.66 |
| PGSC0003DMT400017962 | Potato | peroxisome, plasma membrane, vacuole | 68.37 | 68.37 |
| Solyc02g068080.2.1 | Tomato | peroxisome, plasma membrane, vacuole | 68.24 | 68.24 |
| VIT_14s0068g02190.t01 | Wine grape | plasma membrane | 68.37 | 67.93 |
| CDX67478 | Canola | plasma membrane | 66.71 | 67.92 |
| Bra028478.1-P | Field mustard | plasma membrane | 66.71 | 67.92 |
| CDY11722 | Canola | plasma membrane | 66.58 | 67.79 |
| AT3G27170.1 | Thale cress | plasma membrane | 67.09 | 67.44 |
| CDY15925 | Canola | plasma membrane | 66.71 | 67.4 |
| Bra030328.1-P | Field mustard | plasma membrane | 66.71 | 67.4 |
| CDX83663 | Canola | plasma membrane | 67.22 | 67.31 |
| AT5G40890.1 | Thale cress | plasma membrane | 66.45 | 67.23 |
| Bra025253.1-P | Field mustard | plasma membrane | 67.09 | 67.18 |
| CDY13685 | Canola | plasma membrane | 67.09 | 67.18 |
| CDY34173 | Canola | plasma membrane | 66.71 | 67.05 |
| KRH06955 | Soybean | plasma membrane | 63.52 | 66.85 |
| KRG94508 | Soybean | plasma membrane | 67.35 | 66.84 |
| CDX99630 | Canola | plasma membrane | 66.07 | 66.75 |
| KRH57669 | Soybean | plasma membrane | 66.07 | 66.67 |
| CDY28488 | Canola | plasma membrane | 66.45 | 66.54 |
| Bra032985.1-P | Field mustard | plasma membrane | 66.45 | 66.54 |
| Solyc02g094060.2.1 | Tomato | plasma membrane | 62.24 | 63.96 |
| PGSC0003DMT400052072 | Potato | plasma membrane | 63.14 | 63.95 |
| VIT_14s0068g02330.t01 | Wine grape | cytosol, extracellular | 5.87 | 56.1 |
| VIT_00s0316g00020.t01 | Wine grape | cytosol | 5.99 | 55.95 |
| TraesCS3D01G126700.1 | Wheat | plasma membrane | 38.78 | 53.05 |
| TraesCS2D01G308100.1 | Wheat | plasma membrane | 53.19 | 51.8 |
| TraesCS3D01G126600.1 | Wheat | plasma membrane | 50.89 | 49.57 |
| TraesCS5D01G456000.1 | Wheat | plasma membrane | 49.23 | 48.74 |
| TraesCS2D01G519000.2 | Wheat | plasma membrane | 50.38 | 48.29 |
| TraesCS3D01G379600.1 | Wheat | plasma membrane, plastid | 48.6 | 47.98 |
| TraesCS4D01G033500.1 | Wheat | plasma membrane | 40.69 | 39.73 |
Protein Annotations
| Gene3D:1.10.3080.10 | MapMan:24.2.16 | Gene3D:3.10.580.10 | InterPro:CBS_dom | InterPro:Cl-channel_core | InterPro:Cl-channel_volt-gated |
| InterPro:Cl_channel_pln | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005247 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0006821 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0055085 | InterPro:IPR000644 | InterPro:IPR014743 |
| PFAM:PF00571 | PFAM:PF00654 | PRINTS:PR00762 | PRINTS:PR01120 | PFscan:PS51371 | PANTHER:PTHR11689 |
| PANTHER:PTHR11689:SF67 | SMART:SM00116 | SUPFAM:SSF54631 | SUPFAM:SSF81340 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS6D01G084000 |
| EnsemblPlants:TraesCS6D01G084000.2 | TIGR:cd03685 | TIGR:cd04591 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr6D:-:48866866..48869479
Molecular Weight (calculated)
85426.0 Da
IEP (calculated)
8.175
GRAVY (calculated)
0.362
Length
784 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEETPTMAG PGPGRKHDNG VNDPEEGPGS AGDGISSLEQ PLLKKSNTLT ANHLAMVGAK VSHIESLDYE IIENDLFKHD WRSRSTVEVL QYVFLKWALA
101: FLVGLLTGVI ASLINLAIEN ISGIKMLHMV QLVRDKRYWA GFFYFSGFNL ALTFVAAVLC VVFAPTAAGP GIPEIKAYLN GVDTPNMFGA PQLIVKIIGS
201: ICAVSSGLDL GKEGPLVHIG ACLANLLSQG GSGRFRLRWK WLRYFNNDRD RRDLITCGAS SGVCAAFRSP VGGVLFALEE VATWWRSALL WRTFFSTATV
301: VVVLRGFIEV CRGGRCGLFG AGGLIIFDVG DVTVRYRLGD LLLVTLVGVI GGVLGALYNH VLHMVLRLYN LINDKGRMAK LALALAVCVF TSAGLYVLPF
401: AVPCTPCDPA FGAACPATGR SGNFKQFNCP AGQYNDLATL LHATNVDATR NIFSTGTPGE FRLDSLLIFF AIYCVLGLFT FGIAVPSGLF LPIILMGAAY
501: GRIVALVLQS AVAASIDHGL YAVLGAAALM SGSMRMTVSL CVIFLELTNN LTLLPMTMFV LLIAKTVGDA FNPSIYEIIL DLKGLPFLEP KPEPWMKDLT
601: VGELAAAKAR TISLQVVEKV STVLEVLRNT GHNGFPVVDR PRPGLSELHG LVLRSHLVAV LRKRWFLAEK RRTEEWEARE RFSSVELADK NCKIDDLELT
701: PEELEMYVDL HPFTNTTPYT VVETMSVAKA VVLFRSVALR HMLIMPKYQG PEISPLVGIL TRQDLRAHNI LGAFPHLSKK SKAH
101: FLVGLLTGVI ASLINLAIEN ISGIKMLHMV QLVRDKRYWA GFFYFSGFNL ALTFVAAVLC VVFAPTAAGP GIPEIKAYLN GVDTPNMFGA PQLIVKIIGS
201: ICAVSSGLDL GKEGPLVHIG ACLANLLSQG GSGRFRLRWK WLRYFNNDRD RRDLITCGAS SGVCAAFRSP VGGVLFALEE VATWWRSALL WRTFFSTATV
301: VVVLRGFIEV CRGGRCGLFG AGGLIIFDVG DVTVRYRLGD LLLVTLVGVI GGVLGALYNH VLHMVLRLYN LINDKGRMAK LALALAVCVF TSAGLYVLPF
401: AVPCTPCDPA FGAACPATGR SGNFKQFNCP AGQYNDLATL LHATNVDATR NIFSTGTPGE FRLDSLLIFF AIYCVLGLFT FGIAVPSGLF LPIILMGAAY
501: GRIVALVLQS AVAASIDHGL YAVLGAAALM SGSMRMTVSL CVIFLELTNN LTLLPMTMFV LLIAKTVGDA FNPSIYEIIL DLKGLPFLEP KPEPWMKDLT
601: VGELAAAKAR TISLQVVEKV STVLEVLRNT GHNGFPVVDR PRPGLSELHG LVLRSHLVAV LRKRWFLAEK RRTEEWEARE RFSSVELADK NCKIDDLELT
701: PEELEMYVDL HPFTNTTPYT VVETMSVAKA VVLFRSVALR HMLIMPKYQG PEISPLVGIL TRQDLRAHNI LGAFPHLSKK SKAH
001: MVEEDLNQIG GNSNYNGEGG DPESNTLNQP LVKANRTLSS TPLALVGAKV SHIESLDYEI NENDLFKHDW RKRSKAQVLQ YVFLKWTLAC LVGLFTGLIA
101: TLINLAVENI AGYKLLAVGH FLTQERYVTG LMVLVGANLG LTLVASVLCV CFAPTAAGPG IPEIKAYLNG VDTPNMFGAT TMIVKIVGSI GAVAAGLDLG
201: KEGPLVHIGS CIASLLGQGG TDNHRIKWRW LRYFNNDRDR RDLITCGSAA GVCAAFRSPV GGVLFALEEV ATWWRSALLW RTFFSTAVVV VVLREFIEIC
301: NSGKCGLFGK GGLIMFDVSH VTYTYHVTDI IPVMLIGVIG GILGSLYNHL LHKVLRLYNL INEKGKIHKV LLSLTVSLFT SVCLYGLPFL AKCKPCDPSI
401: DEICPTNGRS GNFKQFHCPK GYYNDLATLL LTTNDDAVRN LFSSNTPNEF GMGSLWIFFV LYCILGLFTF GIATPSGLFL PIILMGAAYG RMLGAAMGSY
501: TSIDQGLYAV LGAAALMAGS MRMTVSLCVI FLELTNNLLL LPITMIVLLI AKTVGDSFNP SIYDIILHLK GLPFLEANPE PWMRNLTVGE LGDAKPPVVT
601: LQGVEKVSNI VDVLKNTTHN AFPVLDEAEV PQVGLATGAT ELHGLILRAH LVKVLKKRWF LTEKRRTEEW EVREKFPWDE LAEREDNFDD VAITSAEMEM
701: YVDLHPLTNT TPYTVMENMS VAKALVLFRQ VGLRHLLIVP KIQASGMCPV VGILTRQDLR AYNILQAFPL LEKSKGGKTH
101: TLINLAVENI AGYKLLAVGH FLTQERYVTG LMVLVGANLG LTLVASVLCV CFAPTAAGPG IPEIKAYLNG VDTPNMFGAT TMIVKIVGSI GAVAAGLDLG
201: KEGPLVHIGS CIASLLGQGG TDNHRIKWRW LRYFNNDRDR RDLITCGSAA GVCAAFRSPV GGVLFALEEV ATWWRSALLW RTFFSTAVVV VVLREFIEIC
301: NSGKCGLFGK GGLIMFDVSH VTYTYHVTDI IPVMLIGVIG GILGSLYNHL LHKVLRLYNL INEKGKIHKV LLSLTVSLFT SVCLYGLPFL AKCKPCDPSI
401: DEICPTNGRS GNFKQFHCPK GYYNDLATLL LTTNDDAVRN LFSSNTPNEF GMGSLWIFFV LYCILGLFTF GIATPSGLFL PIILMGAAYG RMLGAAMGSY
501: TSIDQGLYAV LGAAALMAGS MRMTVSLCVI FLELTNNLLL LPITMIVLLI AKTVGDSFNP SIYDIILHLK GLPFLEANPE PWMRNLTVGE LGDAKPPVVT
601: LQGVEKVSNI VDVLKNTTHN AFPVLDEAEV PQVGLATGAT ELHGLILRAH LVKVLKKRWF LTEKRRTEEW EVREKFPWDE LAEREDNFDD VAITSAEMEM
701: YVDLHPLTNT TPYTVMENMS VAKALVLFRQ VGLRHLLIVP KIQASGMCPV VGILTRQDLR AYNILQAFPL LEKSKGGKTH
Arabidopsis Description
CLC-BChloride channel protein [Source:UniProtKB/TrEMBL;Acc:A0A178VKG6]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.