Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27341663
|
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER90148 | Sorghum | plasma membrane | 96.5 | 96.5 |
| TraesCS6D01G084300.1 | Wheat | cytosol, nucleus, plasma membrane | 84.77 | 86.28 |
| TraesCS6B01G126400.1 | Wheat | plasma membrane | 84.64 | 86.15 |
| TraesCS6A01G098600.1 | Wheat | plasma membrane | 83.4 | 85.86 |
| TraesCS6B01G126800.1 | Wheat | plasma membrane | 83.65 | 85.46 |
| TraesCS6D01G084000.2 | Wheat | plasma membrane | 83.52 | 85.33 |
| TraesCS6A01G098500.2 | Wheat | cytosol, peroxisome, plasma membrane | 82.4 | 82.91 |
| Os12t0438600-01 | Rice | plasma membrane | 14.73 | 77.63 |
| GSMUA_Achr3P16100_001 | Banana | plasma membrane | 67.29 | 74.34 |
| HORVU0Hr1G015220.3 | Barley | cytosol | 36.33 | 70.8 |
| VIT_14s0068g02190.t01 | Wine grape | plasma membrane | 68.66 | 69.71 |
| PGSC0003DMT400017962 | Potato | peroxisome, plasma membrane, vacuole | 67.29 | 68.75 |
| CDY11722 | Canola | plasma membrane | 66.04 | 68.7 |
| CDX67478 | Canola | plasma membrane | 66.04 | 68.7 |
| Bra028478.1-P | Field mustard | plasma membrane | 66.04 | 68.7 |
| Solyc02g068080.2.1 | Tomato | peroxisome, plasma membrane, vacuole | 67.17 | 68.62 |
| KRH06955 | Soybean | plasma membrane | 63.67 | 68.46 |
| KRG94508 | Soybean | plasma membrane | 67.29 | 68.23 |
| KRH57669 | Soybean | plasma membrane | 66.04 | 68.08 |
| CDY34173 | Canola | plasma membrane | 66.29 | 68.08 |
| CDY13685 | Canola | plasma membrane | 66.54 | 68.07 |
| CDX83663 | Canola | plasma membrane | 66.54 | 68.07 |
| Bra025253.1-P | Field mustard | plasma membrane | 66.54 | 68.07 |
| CDY15925 | Canola | plasma membrane | 65.92 | 68.04 |
| Bra030328.1-P | Field mustard | plasma membrane | 65.92 | 68.04 |
| AT5G40890.1 | Thale cress | plasma membrane | 65.67 | 67.87 |
| CDY28488 | Canola | plasma membrane | 66.17 | 67.69 |
| AT3G27170.1 | Thale cress | plasma membrane | 65.79 | 67.56 |
| Bra032985.1-P | Field mustard | plasma membrane | 66.04 | 67.56 |
| CDX99630 | Canola | plasma membrane | 65.29 | 67.4 |
| Solyc02g094060.2.1 | Tomato | plasma membrane | 62.05 | 65.14 |
| PGSC0003DMT400052072 | Potato | plasma membrane | 62.92 | 65.12 |
| VIT_14s0068g02330.t01 | Wine grape | cytosol, extracellular | 5.99 | 58.54 |
| VIT_00s0316g00020.t01 | Wine grape | cytosol | 6.12 | 58.33 |
| Zm00001d039812_P001 | Maize | plasma membrane | 15.98 | 52.24 |
| Zm00001d025474_P003 | Maize | plasma membrane | 50.44 | 50.82 |
| Zm00001d002091_P002 | Maize | plasma membrane | 48.06 | 50.79 |
| Zm00001d042651_P001 | Maize | plasma membrane | 49.69 | 50.13 |
| Zm00001d015702_P001 | Maize | plasma membrane | 40.07 | 49.54 |
| Zm00001d016855_P002 | Maize | plasma membrane | 49.94 | 48.31 |
| Zm00001d015700_P001 | Maize | plasma membrane | 11.24 | 40.91 |
| Zm00001d033597_P004 | Maize | plasma membrane | 39.58 | 40.59 |
| Zm00001d003594_P001 | Maize | plasma membrane | 10.49 | 29.07 |
Protein Annotations
| EntrezGene:100502532 | MapMan:24.2.16 | Gene3D:3.10.580.10 | ProteinID:AQL05187.1 | InterPro:CBS_dom | InterPro:Cl-channel_core |
| InterPro:Cl-channel_volt-gated | InterPro:Cl_channel_pln | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005216 | GO:GO:0005247 |
| GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006811 | GO:GO:0006821 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0034220 | GO:GO:0055085 | GO:GO:1902476 | InterPro:IPR000644 | InterPro:IPR014743 |
| UniProt:K7VJQ9 | PFAM:PF00654 | PRINTS:PR00762 | PRINTS:PR01120 | PFscan:PS51371 | PANTHER:PTHR11689 |
| PANTHER:PTHR11689:SF67 | SUPFAM:SSF54631 | SUPFAM:SSF81340 | TMHMM:TMhelix | UniParc:UPI00022108A9 | EnsemblPlantsGene:Zm00001d046919 |
| EnsemblPlants:Zm00001d046919_P001 | EnsemblPlants:Zm00001d046919_T001 | SEG:seg | : | : | : |
Description
Chloride channel protein CLC-b
Coordinates
chr9:+:110691826..110696403
Molecular Weight (calculated)
87475.0 Da
IEP (calculated)
7.379
GRAVY (calculated)
0.312
Length
801 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEEQSPRLG RDPATEPSPA PEWPDSDSKN DDSANDPEDP AGGSGSGSGN GISSLEQPLL KRSTTLTASH LAIVGAKVSH IESLDYEIIE NDLFKHDWRS
101: RSNVEVLQYI FLKWAMAFLV GLLTGVIASL INLAIENISG LKMLQMVNLV RGKRYWAGFL YFAGVNFALT FVAAVLCVVF APTAAGPGIP EIKAYLNGVD
201: TPNMFGAPQL IVKIIGSIGA VSSGMDLGKE GPLVHIGACL ANLLSQGGEG RWRLRWRWLR YFNNDRDRRD LITCGASSGV CAAFRAPVGG VLFALEEVAT
301: WWRSALLWRT FFSTATVVVV LRGFIEVCRD GRCGMFGEGG LILFDVSDVT VRYHVGDLLP VTLVGVLGGV LGALYNHVLH QVLRLYNLIN AKGRLAKLAL
401: ALAVSVFTSA GLYLLPFAVP CTPCDPAFGD ACPTVGKSGN FKQFNCPTGY YNDLASLLHA TNVDATRNIF STGTAGEFRL DSLLIFFGIY CVLGLFTFGI
501: AVPSGLFLPI ILMGSAYGRI LALVLARFVR IDHGLYAVLG AAALMSGSMR MTVSLCVIFL ELTNNLLLLP ITMFVLLIAK TVGDAFNPSI YEIILDLKGL
601: PFLEPKPETW MKDLAVGELA AAKPRVVTLQ VIEKVSTVVE VLRSTPHNGF PVLDWPRPGV SELHGLVLRS HLMAVLKKRW FLTDKRRTEE WEARERFSST
701: ELAEKSGSID EVAVQLTPEE LDMYIDLHPF TNTTPYTVVE TMSVAKAVVL FRTCALRHML IIPKFQGPEI APIVGILTRQ DLRAHNILGA FPHLANKRKV
801: H
101: RSNVEVLQYI FLKWAMAFLV GLLTGVIASL INLAIENISG LKMLQMVNLV RGKRYWAGFL YFAGVNFALT FVAAVLCVVF APTAAGPGIP EIKAYLNGVD
201: TPNMFGAPQL IVKIIGSIGA VSSGMDLGKE GPLVHIGACL ANLLSQGGEG RWRLRWRWLR YFNNDRDRRD LITCGASSGV CAAFRAPVGG VLFALEEVAT
301: WWRSALLWRT FFSTATVVVV LRGFIEVCRD GRCGMFGEGG LILFDVSDVT VRYHVGDLLP VTLVGVLGGV LGALYNHVLH QVLRLYNLIN AKGRLAKLAL
401: ALAVSVFTSA GLYLLPFAVP CTPCDPAFGD ACPTVGKSGN FKQFNCPTGY YNDLASLLHA TNVDATRNIF STGTAGEFRL DSLLIFFGIY CVLGLFTFGI
501: AVPSGLFLPI ILMGSAYGRI LALVLARFVR IDHGLYAVLG AAALMSGSMR MTVSLCVIFL ELTNNLLLLP ITMFVLLIAK TVGDAFNPSI YEIILDLKGL
601: PFLEPKPETW MKDLAVGELA AAKPRVVTLQ VIEKVSTVVE VLRSTPHNGF PVLDWPRPGV SELHGLVLRS HLMAVLKKRW FLTDKRRTEE WEARERFSST
701: ELAEKSGSID EVAVQLTPEE LDMYIDLHPF TNTTPYTVVE TMSVAKAVVL FRTCALRHML IIPKFQGPEI APIVGILTRQ DLRAHNILGA FPHLANKRKV
801: H
001: MDEDGNLQIS NSNYNGEEEG EDPENNTLNQ PLLKRHRTLS STPLALVGAK VSHIESLDYE INENDLFKHD WRSRSKAQVF QYIFLKWTLA CLVGLFTGLI
101: ATLINLAVEN IAGYKLLAVG YYIAQDRFWT GLMVFTGANL GLTLVATVLV VYFAPTAAGP GIPEIKAYLN GIDTPNMFGF TTMMVKIVGS IGAVAAGLDL
201: GKEGPLVHIG SCIASLLGQG GPDNHRIKWR WLRYFNNDRD RRDLITCGSA SGVCAAFRSP VGGVLFALEE VATWWRSALL WRTFFSTAVV VVVLRAFIEI
301: CNSGKCGLFG SGGLIMFDVS HVEVRYHAAD IIPVTLIGVF GGILGSLYNH LLHKVLRLYN LINQKGKIHK VLLSLGVSLF TSVCLFGLPF LAECKPCDPS
401: IDEICPTNGR SGNFKQFNCP NGYYNDLSTL LLTTNDDAVR NIFSSNTPNE FGMVSLWIFF GLYCILGLIT FGIATPSGLF LPIILMGSAY GRMLGTAMGS
501: YTNIDQGLYA VLGAASLMAG SMRMTVSLCV IFLELTNNLL LLPITMFVLL IAKTVGDSFN LSIYEIILHL KGLPFLEANP EPWMRNLTVG ELNDAKPPVV
601: TLNGVEKVAN IVDVLRNTTH NAFPVLDGAD QNTGTELHGL ILRAHLVKVL KKRWFLNEKR RTEEWEVREK FTPVELAERE DNFDDVAITS SEMQLYVDLH
701: PLTNTTPYTV VQSMSVAKAL VLFRSVGLRH LLVVPKIQAS GMSPVIGILT RQDLRAYNIL QAFPHLDKHK SGKAR
101: ATLINLAVEN IAGYKLLAVG YYIAQDRFWT GLMVFTGANL GLTLVATVLV VYFAPTAAGP GIPEIKAYLN GIDTPNMFGF TTMMVKIVGS IGAVAAGLDL
201: GKEGPLVHIG SCIASLLGQG GPDNHRIKWR WLRYFNNDRD RRDLITCGSA SGVCAAFRSP VGGVLFALEE VATWWRSALL WRTFFSTAVV VVVLRAFIEI
301: CNSGKCGLFG SGGLIMFDVS HVEVRYHAAD IIPVTLIGVF GGILGSLYNH LLHKVLRLYN LINQKGKIHK VLLSLGVSLF TSVCLFGLPF LAECKPCDPS
401: IDEICPTNGR SGNFKQFNCP NGYYNDLSTL LLTTNDDAVR NIFSSNTPNE FGMVSLWIFF GLYCILGLIT FGIATPSGLF LPIILMGSAY GRMLGTAMGS
501: YTNIDQGLYA VLGAASLMAG SMRMTVSLCV IFLELTNNLL LLPITMFVLL IAKTVGDSFN LSIYEIILHL KGLPFLEANP EPWMRNLTVG ELNDAKPPVV
601: TLNGVEKVAN IVDVLRNTTH NAFPVLDGAD QNTGTELHGL ILRAHLVKVL KKRWFLNEKR RTEEWEVREK FTPVELAERE DNFDDVAITS SEMQLYVDLH
701: PLTNTTPYTV VQSMSVAKAL VLFRSVGLRH LLVVPKIQAS GMSPVIGILT RQDLRAYNIL QAFPHLDKHK SGKAR
Arabidopsis Description
CLC-AChloride channel protein CLC-a [Source:UniProtKB/Swiss-Prot;Acc:P92941]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.