CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX78905
CDX84933
CDX97739
CDX98596
CDX99411
CDY01565
CDY03907
CDY15722
CDY27605
CDY30157

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40890.1	CDX84933	AT1G27300.1	21798944
AT5G40890.1	CDY03907	AT1G27300.1	21798944
AT5G40890.1	CDY15722	AT1G27300.1	21798944
AT5G40890.1	CDY27605	AT1G27300.1	21798944
AT5G40890.1	CDX97739	AT3G16310.1	21798944
AT5G40890.1	CDY30157	AT3G16310.1	21798944
AT5G40890.1	CDX78905	AT4G19030.1	21798944
AT5G40890.1	CDX98596	AT4G19030.1	21798944
AT5G40890.1	CDX99411	AT4G19030.1	21798944
AT5G40890.1	CDY01565	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028478.1-P	Field mustard	plasma membrane	99.87	99.87
CDY11722	Canola	plasma membrane	99.35	99.35
CDY15925	Canola	plasma membrane	97.01	96.26
CDX99630	Canola	plasma membrane	96.62	95.88
AT5G40890.1	Thale cress	plasma membrane	94.81	94.19
CDY13685	Canola	plasma membrane	87.66	86.21
CDX83663	Canola	plasma membrane	87.4	85.95
CDY34173	Canola	plasma membrane	86.62	85.51
CDY28488	Canola	plasma membrane	86.75	85.31
VIT_14s0068g02190.t01	Wine grape	plasma membrane	81.04	79.09
KRG94508	Soybean	plasma membrane	80.39	78.35
KRH06955	Soybean	plasma membrane	75.45	77.99
KRH57669	Soybean	plasma membrane	78.57	77.86
Solyc02g068080.2.1	Tomato	peroxisome, plasma membrane, vacuole	78.18	76.79
PGSC0003DMT400017962	Potato	peroxisome, plasma membrane, vacuole	78.05	76.66
Solyc02g094060.2.1	Tomato	plasma membrane	70.78	71.43
PGSC0003DMT400052072	Potato	plasma membrane	71.69	71.32
GSMUA_Achr3P16100_001	Banana	plasma membrane	65.97	70.07
TraesCS6A01G098600.1	Wheat	plasma membrane	68.18	67.48
TraesCS6B01G126400.1	Wheat	plasma membrane	68.83	67.34
TraesCS6D01G084300.1	Wheat	cytosol, nucleus, plasma membrane	68.7	67.22
TraesCS6B01G126800.1	Wheat	plasma membrane	68.05	66.84
TraesCS6D01G084000.2	Wheat	plasma membrane	67.92	66.71
EER90148	Sorghum	plasma membrane	68.7	66.04
Zm00001d046919_P001	Maize	plasma membrane	68.7	66.04
TraesCS6A01G098500.2	Wheat	cytosol, peroxisome, plasma membrane	66.88	64.7
HORVU0Hr1G015220.3	Barley	cytosol	29.22	54.74
CDY12393	Canola	plasma membrane	52.47	52.88
CDY47559	Canola	plasma membrane	52.47	52.88
CDY16376	Canola	plasma membrane	52.08	51.74
CDY21447	Canola	plasma membrane	52.08	51.74
CDX91539	Canola	plasma membrane	51.95	51.61
CDX83179	Canola	plasma membrane	51.95	51.61
Os12t0438600-01	Rice	plasma membrane	9.87	50.0
CDX88226	Canola	plasma membrane	42.6	41.41
CDY52633	Canola	plasma membrane	42.73	41.02

Protein Annotations

MapMan:24.2.16	Gene3D:3.10.580.10	GO:A0A078BWU6	InterPro:CBS_dom	EnsemblPlants:CDX67478	ProteinID:CDX67478
ProteinID:CDX67478.1	InterPro:Cl-channel_core	InterPro:Cl-channel_volt-gated	InterPro:Cl_channel_pln	GO:GO:0003674	GO:GO:0005215
GO:GO:0005247	GO:GO:0005575	GO:GO:0006810	GO:GO:0006821	GO:GO:0008150	GO:GO:0016020
GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00098585001	InterPro:IPR000644	InterPro:IPR014743	PFAM:PF00571	PFAM:PF00654
PRINTS:PR00762	PRINTS:PR01120	PFscan:PS51371	PANTHER:PTHR11689	PANTHER:PTHR11689:SF67	SMART:SM00116
SUPFAM:SSF54631	SUPFAM:SSF81340	TMHMM:TMhelix	UniParc:UPI0004EECBDF	SEG:seg	:

Description

BnaA07g15180D

Coordinates

chrLK031787:-:490035..493383

Molecular Weight (calculated)

84678.7 Da

IEP (calculated)

7.896

GRAVY (calculated)

0.257

Length

770 amino acids

Sequence
(BLAST)

001: MDEDGNLQIS NSNYNGEEEA DPENNTMNQP LLKRHRTLSS TPLALVGTKV SHIESLDYEI NENDLFKHDW RSRSKAQVLQ YIFAKWTLAF LVGLLTGLIA
101: TLINLAVENI AGYKLLAVGH YISQDRYVTG LLVFTGANLG LTLVATVLVV VFAPTAAGPG IPEIKAYLNG IDTPNMFGAT TMIVKIVGSI GAVAAGLDLG
201: KEGPLVHIGS CIASLLGQGG PDNHRIKWRW LRYFNNDRDR RDLITCGSAS GVCAAFRSPV GGVLFALEEV ATWWRSALLW RTFFSTAVVV VVLRAFIEIC
301: NSGKCGLFGK GGLIMFDVSH VEVRYHAVDI IPVTLIGVIG GILGSLYNHL LHKVLRLYNL INQKGKIHKV LLSLSVSLFT SLCLYGLPFL AECKPCNPSI
401: DEACPTNGRS GNFKQFNCPN GYYNDLATLF LTTNDDAVRN VFSSNTPNEF GMVSLWIYFG LYCILGLITF GIATPSGLFL PIILMGSAYG RMLGTVMGPY
501: TKIDQGLYAV LGAASLMAGS MRMTVSLCVI FLELTNNLLL LPITMFVLLI AKTVGDSFNL SIYEIILHLK GLPFLEANPE PWMRNLTVGE LGDAKPPVVT
601: LSGVEKVANI VDALRNTTHN AFPVLDGDAT ELHGLILRAH LVKVLKKRWF LNEKRRTEDW EVREKFTPVE LAEREDNFDD VGITSSEMQM YVDLHPLTNT
701: TPYTVVQSMS VAKALVLFRS VGLRHLLIVP KIQASGMSPV IGILTRQDLR AYNILQAFPH LDKHKSGKLR

Best Arabidopsis Sequence Match ( AT5G40890.1 )
(BLAST)

001: MDEDGNLQIS NSNYNGEEEG EDPENNTLNQ PLLKRHRTLS STPLALVGAK VSHIESLDYE INENDLFKHD WRSRSKAQVF QYIFLKWTLA CLVGLFTGLI
101: ATLINLAVEN IAGYKLLAVG YYIAQDRFWT GLMVFTGANL GLTLVATVLV VYFAPTAAGP GIPEIKAYLN GIDTPNMFGF TTMMVKIVGS IGAVAAGLDL
201: GKEGPLVHIG SCIASLLGQG GPDNHRIKWR WLRYFNNDRD RRDLITCGSA SGVCAAFRSP VGGVLFALEE VATWWRSALL WRTFFSTAVV VVVLRAFIEI
301: CNSGKCGLFG SGGLIMFDVS HVEVRYHAAD IIPVTLIGVF GGILGSLYNH LLHKVLRLYN LINQKGKIHK VLLSLGVSLF TSVCLFGLPF LAECKPCDPS
401: IDEICPTNGR SGNFKQFNCP NGYYNDLSTL LLTTNDDAVR NIFSSNTPNE FGMVSLWIFF GLYCILGLIT FGIATPSGLF LPIILMGSAY GRMLGTAMGS
501: YTNIDQGLYA VLGAASLMAG SMRMTVSLCV IFLELTNNLL LLPITMFVLL IAKTVGDSFN LSIYEIILHL KGLPFLEANP EPWMRNLTVG ELNDAKPPVV
601: TLNGVEKVAN IVDVLRNTTH NAFPVLDGAD QNTGTELHGL ILRAHLVKVL KKRWFLNEKR RTEEWEVREK FTPVELAERE DNFDDVAITS SEMQLYVDLH
701: PLTNTTPYTV VQSMSVAKAL VLFRSVGLRH LLVVPKIQAS GMSPVIGILT RQDLRAYNIL QAFPHLDKHK SGKAR

Arabidopsis Description

CLC-AChloride channel protein CLC-a [Source:UniProtKB/Swiss-Prot;Acc:P92941]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.